Multiple platform build/check report for BioC 3.11 - CHECK report for HilbertCurve on celaya2

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HilbertCurve_1.17.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/HilbertCurve.Rcheck’
* using R Under development (unstable) (2019-12-14 r77572)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.17.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                      user system elapsed
hc_layer-HilbertCurve-method        26.329  1.603  29.627
hc_layer-GenomicHilbertCurve-method 18.326  0.512  19.637
GenomicHilbertCurve                 15.269  0.310  17.197
hc_png-HilbertCurve-method           8.881  0.510  10.523
hc_map-GenomicHilbertCurve-method    8.638  0.134  10.064
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HilbertCurve
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘HilbertCurve’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘HilbertCurve.Rmd’ 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertCurve)

Tests output


R Under development (unstable) (2019-12-14 r77572) -- "Unsuffered Consequences"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
> 
> test_check("HilbertCurve")
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 8 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
  7.835   0.743   8.528

Example timings

name	user	system	elapsed
GenomicHilbertCurve-class	0.000	0.000	0.001
GenomicHilbertCurve	15.269	0.310	17.197
HilbertCurve-class	0.000	0.000	0.001
HilbertCurve	0.722	0.025	0.780
default_overlay	0.001	0.001	0.001
hc_centered_text-HilbertCurve-method	0.272	0.004	0.361
hc_layer-GenomicHilbertCurve-method	18.326	0.512	19.637
hc_layer-HilbertCurve-method	26.329	1.603	29.627
hc_layer-dispatch	0.001	0.001	0.003
hc_level-HilbertCurve-method	0.052	0.005	0.061
hc_map-GenomicHilbertCurve-method	8.638	0.134	10.064
hc_normal_points-HilbertCurve-method	0.000	0.000	0.001
hc_offset-HilbertCurve-method	0.020	0.001	0.022
hc_png-HilbertCurve-method	8.881	0.510	10.523
hc_points-GenomicHilbertCurve-method	0.824	0.020	0.865
hc_points-HilbertCurve-method	1.199	0.028	1.282
hc_points-dispatch	0.000	0.001	0.000
hc_polygon-GenomicHilbertCurve-method	1.026	0.012	1.050
hc_polygon-HilbertCurve-method	0.257	0.007	0.267
hc_polygon-dispatch	0.000	0.000	0.001
hc_rect-GenomicHilbertCurve-method	0.659	0.013	0.688
hc_rect-HilbertCurve-method	0.201	0.008	0.209
hc_rect-dispatch	0.000	0.001	0.000
hc_segmented_points-HilbertCurve-method	0.001	0.000	0.000
hc_segments-GenomicHilbertCurve-method	1.228	0.018	1.247
hc_segments-HilbertCurve-method	0.202	0.006	0.209
hc_segments-dispatch	0	0	0
hc_text-GenomicHilbertCurve-method	0.493	0.011	0.507
hc_text-HilbertCurve-method	0.547	0.030	0.577
hc_text-dispatch	0.001	0.000	0.000
is_white	0.000	0.000	0.001
show-HilbertCurve-method	0.016	0.001	0.017
unzoom-HilbertCurve-method	0.015	0.001	0.017
zoom-HilbertCurve-method	0.017	0.001	0.018

CHECK report for HilbertCurve on celaya2

Summary

Command output

Installation output

Tests output

Example timings