Koustav Pal
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/HiCBricks |
| Branch: RELEASE_3_11 |
| Last Commit: 853214f |
| Last Changed Date: 2020-04-27 15:20:41 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:49 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE HiCBricks PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 814/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HiCBricks 1.6.0 Koustav Pal
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: HiCBricks |
| Version: 1.6.0 |
| Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HiCBricks.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings HiCBricks_1.6.0.tar.gz |
| StartedAt: 2020-10-17 04:54:55 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 05:12:18 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 1042.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCBricks.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HiCBricks.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings HiCBricks_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/HiCBricks.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HiCBricks/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HiCBricks' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HiCBricks' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Brick_export_to_sparse 3.23 0.69 20.80
Brick_local_score_differentiator 2.58 0.89 14.44
Brick_call_compartments 2.32 0.66 8.15
Brick_fetch_row_vector 2.28 0.67 18.58
Brick_get_matrix_within_coords 2.26 0.68 25.71
BrickContainer_unlink_resolution 2.20 0.58 23.03
Brick_get_values_by_distance 1.81 0.78 20.69
Brick_get_matrix_mcols 1.66 0.74 30.15
Brick_get_vector_values 1.63 0.74 11.95
Brick_load_matrix 1.61 0.71 8.20
Brick_get_entire_matrix 1.65 0.66 25.71
Brick_get_matrix 1.69 0.42 16.92
Brick_fetch_range_index 1.36 0.31 25.84
Brick_list_ranges_mcols 1.36 0.29 11.22
BrickContainer_change_output_directory 1.30 0.30 80.11
BrickContainer_change_experiment_name 1.31 0.26 53.40
BrickContainer_get_path_to_file 1.27 0.20 12.67
Brick_get_ranges 0.99 0.41 20.73
Brick_list_rangekeys 1.11 0.25 9.85
BrickContainer_list_resolutions 0.94 0.42 17.56
BrickContainer_list_files 1.05 0.30 9.98
Brick_get_chrominfo 1.03 0.32 29.20
Brick_list_matrices 1.11 0.23 6.47
BrickContainer_list_output_directory 1.08 0.18 9.71
Brick_list_matrix_mcols 1.04 0.22 8.02
BrickContainer_list_experiment_name 0.87 0.27 128.37
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Brick_export_to_sparse 3.74 0.64 5.91
Brick_vizart_plot_heatmap 2.78 0.47 5.61
Brick_local_score_differentiator 2.55 0.63 6.17
BrickContainer_unlink_resolution 2.46 0.36 8.12
Brick_load_matrix 1.70 0.58 5.57
Brick_load_cis_matrix_till_distance 1.33 0.28 6.65
Brick_return_region_position 1.24 0.28 6.20
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HiCBricks.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/HiCBricks_1.6.0.tar.gz && rm -rf HiCBricks.buildbin-libdir && mkdir HiCBricks.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCBricks.buildbin-libdir HiCBricks_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL HiCBricks_1.6.0.zip && rm HiCBricks_1.6.0.tar.gz HiCBricks_1.6.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2316k 100 2316k 0 0 24.9M 0 --:--:-- --:--:-- --:--:-- 26.9M
install for i386
* installing *source* package 'HiCBricks' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HiCBricks'
finding HTML links ... done
BrickContainer_change_experiment_name html
BrickContainer_change_output_directory
html
BrickContainer_get_path_to_file html
BrickContainer_list_chromosomes html
BrickContainer_list_experiment_name html
BrickContainer_list_files html
BrickContainer_list_output_directory html
BrickContainer_list_resolutions html
BrickContainer_unlink_resolution html
Brick_add_ranges html
Brick_call_compartments html
Brick_export_to_sparse html
Brick_fetch_range_index html
Brick_fetch_row_vector html
Brick_get_bintable html
Brick_get_chrominfo html
Brick_get_entire_matrix html
Brick_get_matrix html
Brick_get_matrix_mcols html
Brick_get_matrix_within_coords html
Brick_get_ranges html
Brick_get_values_by_distance html
Brick_get_vector_values html
Brick_list_matrices html
Brick_list_matrix_mcols html
Brick_list_mcool_normalisations html
Brick_list_mcool_resolutions html
Brick_list_rangekeys html
Brick_list_ranges_mcols html
Brick_load_cis_matrix_till_distance html
Brick_load_data_from_mcool html
Brick_load_data_from_sparse html
Brick_load_matrix html
Brick_local_score_differentiator html
Brick_make_ranges html
Brick_matrix_dimensions html
Brick_matrix_exists html
Brick_matrix_filename html
Brick_matrix_isdone html
Brick_matrix_issparse html
Brick_matrix_maxdist html
Brick_matrix_minmax html
Brick_mcool_normalisation_exists html
Brick_rangekey_exists html
Brick_return_region_position html
Brick_vizart_plot_heatmap html
Create_many_Bricks html
Create_many_Bricks_from_mcool html
HiCBricks html
load_BrickContainer html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HiCBricks' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCBricks' as HiCBricks_1.6.0.zip
* DONE (HiCBricks)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'HiCBricks' successfully unpacked and MD5 sums checked
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HiCBricks.Rcheck/examples_i386/HiCBricks-Ex.timings
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HiCBricks.Rcheck/examples_x64/HiCBricks-Ex.timings
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