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INSTALL report for GeneTonic on tokay2

This page was generated on 2020-10-17 11:56:39 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE GeneTonic PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 697/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneTonic 1.0.1
Federico Marini
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/GeneTonic
Branch: RELEASE_3_11
Last Commit: 8bbf7d5
Last Changed Date: 2020-05-06 17:46:44 -0400 (Wed, 06 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GeneTonic
Version: 1.0.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/GeneTonic_1.0.1.tar.gz && rm -rf GeneTonic.buildbin-libdir && mkdir GeneTonic.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneTonic.buildbin-libdir GeneTonic_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL GeneTonic_1.0.1.zip && rm GeneTonic_1.0.1.tar.gz GeneTonic_1.0.1.zip
StartedAt: 2020-10-16 18:27:34 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:28:43 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 69.2 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/GeneTonic_1.0.1.tar.gz && rm -rf GeneTonic.buildbin-libdir && mkdir GeneTonic.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneTonic.buildbin-libdir GeneTonic_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL GeneTonic_1.0.1.zip && rm GeneTonic_1.0.1.tar.gz GeneTonic_1.0.1.zip
###
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100  863k  100  863k    0     0  11.9M      0 --:--:-- --:--:-- --:--:-- 13.3M

install for i386

* installing *source* package 'GeneTonic' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneTonic'
    finding HTML links ... done
    GeneTonic-pkg                           html  
    GeneTonic                               html  
    check_colors                            html  
    checkup_GeneTonic                       html  
    create_jaccard_matrix                   html  
    create_kappa_matrix                     html  
    deseqresult2df                          html  
    dot-check_pandoc                        html  
    enhance_table                           html  
    enrichment_map                          html  
    gene_plot                               html  
    geneinfo_2_html                         html  
    get_aggrscores                          html  
    get_expression_values                   html  
    ggs_graph                               html  
    go_2_html                               html  
    gs_alluvial                             html  
    gs_dendro                               html  
    gs_heatmap                              html  
    gs_horizon                              html  
    gs_mds                                  html  
    gs_radar                                html  
    gs_scores                               html  
    gs_scoresheat                           html  
    gs_simplify                             html  
    gs_summary_heat                         html  
    gs_summary_overview                     html  
    gs_summary_overview_pair                html  
    gs_volcano                              html  
    happy_hour                              html  
    map2color                               html  
    finding level-2 HTML links ... done

    overlap_coefficient                     html  
    overlap_jaccard_index                   html  
    res_macrophage_IFNg_vs_naive            html  
    shake_enrichResult                      html  
    shake_topGOtableResult                  html  
    styleColorBar_divergent                 html  
    topgoDE_macrophage_IFNg_vs_naive        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GeneTonic' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneTonic' as GeneTonic_1.0.1.zip
* DONE (GeneTonic)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'GeneTonic' successfully unpacked and MD5 sums checked