Cuilan lani Gao
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/AGDEX |
| Branch: RELEASE_3_11 |
| Last Commit: 60d359b |
| Last Changed Date: 2020-04-27 14:27:03 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:03 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE AGDEX PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 37/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| AGDEX 1.36.0 Cuilan lani Gao
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: AGDEX |
| Version: 1.36.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/AGDEX_1.36.0.tar.gz && rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL AGDEX_1.36.0.zip && rm AGDEX_1.36.0.tar.gz AGDEX_1.36.0.zip |
| StartedAt: 2020-10-16 18:14:06 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:14:32 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 26.0 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/AGDEX_1.36.0.tar.gz && rm -rf AGDEX.buildbin-libdir && mkdir AGDEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AGDEX.buildbin-libdir AGDEX_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL AGDEX_1.36.0.zip && rm AGDEX_1.36.0.tar.gz AGDEX_1.36.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 329k 100 329k 0 0 5115k 0 --:--:-- --:--:-- --:--:-- 5682k
install for i386
* installing *source* package 'AGDEX' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'AGDEX'
finding HTML links ... done
AGDEX-package html
agdex html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsrAV12/R.INSTALL930609e224f/AGDEX/man/agdex.Rd:91: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsrAV12/R.INSTALL930609e224f/AGDEX/man/agdex.Rd:93: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
agdex.res html
agdex.scatterplot html
get.gset.result.details html
gset.data html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsrAV12/R.INSTALL930609e224f/AGDEX/man/gset.data.Rd:24: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
human.data html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsrAV12/R.INSTALL930609e224f/AGDEX/man/human.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
make.dex.set.object html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsrAV12/R.INSTALL930609e224f/AGDEX/man/make.dex.set.object.Rd:37: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsrAV12/R.INSTALL930609e224f/AGDEX/man/make.dex.set.object.Rd:39: file link 'GeneSetCollection' in package 'GSEABase' does not exist and so has been treated as a topic
map.data html
mouse.data html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsrAV12/R.INSTALL930609e224f/AGDEX/man/mouse.data.Rd:35: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
read.agdex.gset.details html
read.agdex.result html
write.agdex.gset.details html
write.agdex.result html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AGDEX' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AGDEX' as AGDEX_1.36.0.zip
* DONE (AGDEX)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'AGDEX' successfully unpacked and MD5 sums checked