Thomas Girke
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/systemPipeR |
| Branch: RELEASE_3_10 |
| Last Commit: 70b884d |
| Last Changed Date: 2019-10-29 13:09:04 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:23:38 -0400 (Wed, 15 Apr 2020).
| Package 1702/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| systemPipeR 1.20.0 Thomas Girke
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: systemPipeR |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/systemPipeR_1.20.0.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.20.0.zip && rm systemPipeR_1.20.0.tar.gz systemPipeR_1.20.0.zip |
| StartedAt: 2020-04-14 19:59:22 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:01:05 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 103.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/systemPipeR_1.20.0.tar.gz && rm -rf systemPipeR.buildbin-libdir && mkdir systemPipeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=systemPipeR.buildbin-libdir systemPipeR_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL systemPipeR_1.20.0.zip && rm systemPipeR_1.20.0.tar.gz systemPipeR_1.20.0.zip
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install for i386
* installing *source* package 'systemPipeR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'systemPipeR'
finding HTML links ... done
GOHyperGAll html
INTERSECTset-class html
SYSargs-class html
SYSargs2-class html
SYSargs2Pipe-class html
SYSargs2Pipe-methods html
SYSargs2list-methods html
VENNset-class html
alignStats html
catDB-class html
catmap html
clusterRun html
countRangeset html
createWF html
featureCoverage html
featuretypeCounts html
filterDEGs html
filterVars html
genFeatures html
getQsubargs html
loadWorkflow html
mergeBamByFactor html
module html
moduleload html
olBarplot html
olRanges html
output_update html
overLapper html
plotfeatureCoverage html
plotfeaturetypeCounts html
predORF html
preprocessReads html
qsubRun html
readComp html
renderWF html
returnRPKM html
runCommandline html
runDiff html
run_DESeq2 html
run_edgeR html
run_track html
scaleRanges html
seeFastq html
subsetWF html
symLink2bam html
sysargs html
systemArgs html
targets.as.df html
variantReport html
vennPlot html
writeTargetsRef html
writeTargetsout html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'systemPipeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'systemPipeR' as systemPipeR_1.20.0.zip
* DONE (systemPipeR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'systemPipeR' successfully unpacked and MD5 sums checked