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INSTALL report for seqplots on tokay1

This page was generated on 2020-04-15 12:23:37 -0400 (Wed, 15 Apr 2020).

Package 1567/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
seqplots 1.24.0
Przemyslaw Stempor
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/seqplots
Branch: RELEASE_3_10
Last Commit: 95b0a96
Last Changed Date: 2019-10-29 13:09:04 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: seqplots
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/seqplots_1.24.0.tar.gz && rm -rf seqplots.buildbin-libdir && mkdir seqplots.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqplots.buildbin-libdir seqplots_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL seqplots_1.24.0.zip && rm seqplots_1.24.0.tar.gz seqplots_1.24.0.zip
StartedAt: 2020-04-14 19:54:54 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 19:57:01 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 126.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/seqplots_1.24.0.tar.gz && rm -rf seqplots.buildbin-libdir && mkdir seqplots.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=seqplots.buildbin-libdir seqplots_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL seqplots_1.24.0.zip && rm seqplots_1.24.0.tar.gz seqplots_1.24.0.zip
###
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100 4855k  100 4855k    0     0  24.0M      0 --:--:-- --:--:-- --:--:-- 24.5M

install for i386

* installing *source* package 'seqplots' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'seqplots'
    finding HTML links ... done
    MotifSetup-class                        html  
    PlotSetArray-class                      html  
    PlotSetList-class                       html  
    PlotSetPair-class                       html  
    add_local_file                          html  
    deployServerInstance                    html  
    getPlotSetArray                         html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpyon367/R.INSTALL1a3858b34adb/seqplots/man/getPlotSetArray.Rd:144: file link 'installed.genomes' in package 'BSgenome' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpyon367/R.INSTALL1a3858b34adb/seqplots/man/getPlotSetArray.Rd:147: file link 'BSgenome' in package 'BSgenome' does not exist and so has been treated as a topic
    getREF                                  html  
    ggHeatmapPlotWrapper                    html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpyon367/R.INSTALL1a3858b34adb/seqplots/man/ggHeatmapPlotWrapper.Rd:75: file link 'grDevices' in package 'grDevices' does not exist and so has been treated as a topic
    heatmapPlotWrapper                      html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpyon367/R.INSTALL1a3858b34adb/seqplots/man/heatmapPlotWrapper.Rd:76: file link 'grDevices' in package 'grDevices' does not exist and so has been treated as a topic
    imPlot2                                 html  
    import.narrowPeak                       html  
    num2bp                                  html  
    num2sci                                 html  
    plot                                    html  
    plotAverage                             html  
    plotHeatmap                             html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpyon367/R.INSTALL1a3858b34adb/seqplots/man/plotHeatmap.Rd:177: file link 'grDevices' in package 'grDevices' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpyon367/R.INSTALL1a3858b34adb/seqplots/man/plotHeatmap.Rd:192: file link 'geom_raster' in package 'ggplot2' does not exist and so has been treated as a topic
    plotMext                                html  
    run                                     html  
    seqplots-generic                        html  
    seqplots                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'seqplots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'seqplots' as seqplots_1.24.0.zip
* DONE (seqplots)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'seqplots' successfully unpacked and MD5 sums checked