Vince Buffalo
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/qrqc |
| Branch: RELEASE_3_10 |
| Last Commit: a7fa1d3 |
| Last Changed Date: 2019-10-29 13:08:20 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:19:51 -0400 (Wed, 15 Apr 2020).
| Package 1343/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| qrqc 1.40.0 Vince Buffalo
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: qrqc |
| Version: 1.40.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/qrqc_1.40.0.tar.gz && rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qrqc.buildbin-libdir qrqc_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL qrqc_1.40.0.zip && rm qrqc_1.40.0.tar.gz qrqc_1.40.0.zip |
| StartedAt: 2020-04-14 20:01:36 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:03:16 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 100.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/qrqc_1.40.0.tar.gz && rm -rf qrqc.buildbin-libdir && mkdir qrqc.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qrqc.buildbin-libdir qrqc_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL qrqc_1.40.0.zip && rm qrqc_1.40.0.tar.gz qrqc_1.40.0.zip
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install for i386
* installing *source* package 'qrqc' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_io.c -o R_init_io.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c io.c -o io.o
In file included from io.c:12:0:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:176:13: warning: 'kseq_destroy' defined but not used [-Wunused-function]
SCOPE void kseq_destroy(kseq_t *ks) \
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:241:2: note: in expansion of macro '__KSEQ_BASIC'
__KSEQ_BASIC(SCOPE, type_t) \
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:244:35: note: in expansion of macro 'KSEQ_INIT2'
#define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
^
io.c:29:1: note: in expansion of macro 'KSEQ_INIT'
KSEQ_INIT(FILE_TYPE*, gzreadclone)
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/usrlib/i386/libhts.a -LC:/extsoft/lib/i386 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -lidn -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/qrqc.buildbin-libdir/00LOCK-qrqc/00new/qrqc/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'qrqc'
finding HTML links ... done
FASTASummary-class html
FASTQSummary-class html
SequenceSummary-class html
basePlot-methods html
calcKL html
gcPlot-methods html
geom_qlinerange html
getBase-methods html
getBaseProp-methods html
getGC-methods html
getKmer-methods html
getMCQual-methods html
getQual-methods html
getSeqlen-methods html
kmerEntropyPlot html
kmerKLPlot html
list2df html
makeReport html
plotBases html
plotGC html
plotQuals html
plotSeqLengths html
qualPlot-methods html
readSeqFile html
scale_color_dna html
scale_color_iupac html
seqlenPlot-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'qrqc' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_io.c -o R_init_io.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c io.c -o io.o
In file included from io.c:12:0:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:176:13: warning: 'kseq_destroy' defined but not used [-Wunused-function]
SCOPE void kseq_destroy(kseq_t *ks) \
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:241:2: note: in expansion of macro '__KSEQ_BASIC'
__KSEQ_BASIC(SCOPE, type_t) \
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/include/htslib/kseq.h:244:35: note: in expansion of macro 'KSEQ_INIT2'
#define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
^
io.c:29:1: note: in expansion of macro 'KSEQ_INIT'
KSEQ_INIT(FILE_TYPE*, gzreadclone)
^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o qrqc.dll tmp.def R_init_io.o io.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -LC:/extsoft/lib/x64 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qrqc' as qrqc_1.40.0.zip
* DONE (qrqc)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'qrqc' successfully unpacked and MD5 sums checked