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INSTALL report for phemd on tokay1

This page was generated on 2020-04-15 12:31:49 -0400 (Wed, 15 Apr 2020).

Package 1255/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
phemd 1.2.0
William S Chen
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/phemd
Branch: RELEASE_3_10
Last Commit: 96eb7b2
Last Changed Date: 2019-10-29 13:11:29 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: phemd
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/phemd_1.2.0.tar.gz && rm -rf phemd.buildbin-libdir && mkdir phemd.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phemd.buildbin-libdir phemd_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL phemd_1.2.0.zip && rm phemd_1.2.0.tar.gz phemd_1.2.0.zip
StartedAt: 2020-04-14 20:29:13 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:30:58 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 104.4 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/phemd_1.2.0.tar.gz && rm -rf phemd.buildbin-libdir && mkdir phemd.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=phemd.buildbin-libdir phemd_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL phemd_1.2.0.zip && rm phemd_1.2.0.tar.gz phemd_1.2.0.zip
###
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install for i386

* installing *source* package 'phemd' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'phemd'
    finding HTML links ... done
    GDM                                     html  
    Phemd-methods                           html  
    Phemd                                   html  
    aggregateSamples                        html  
    all_expn_data                           html  
    all_genes                               html  
    assignCellClusterNearestNode            html  
    batchIDs                                html  
    bindSeuratObj                           html  
    celltypeFreqs                           html  
    clusterIndividualSamples                html  
    compareSamples                          html  
    createDataObj                           html  
    drawColnames45                          html  
    embedCells                              html  
    gaussianffLocal                         html  
    generateGDM                             html  
    getArithmeticCentroids                  html  
    getCellYield                            html  
    getSampleCelltypeFreqs                  html  
    getSampleHistsByCluster                 html  
    getSampleSizes                          html  
    groupSamples                            html  
    heatmap_genes                           html  
    identifyCentroids                       html  
    monocleInfo                             html  
    orderCellsMonocle                       html  
    phateInfo                               html  
    plotCellYield                           html  
    plotEmbeddings                          html  
    plotGroupedSamplesDmap                  html  
    plotHeatmaps                            html  
    plotSummaryHistograms                   html  
    pooledCells                             html  
    printClusterAssignments                 html  
    rawExpn                                 html  
    removeTinySamples                       html  
    retrieveRefClusters                     html  
    sNames                                  html  
    selectFeatures                          html  
    selectMarkers                           html  
    selected_genes                          html  
    seuratInfo                              html  
    snames_data                             html  
    subsampledBool                          html  
    subsampledIdx                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'phemd' ...
** testing if installed package can be loaded
Error in py_module_import(module, convert = convert) : 
  ImportError: No module named phate
* MD5 sums
packaged installation of 'phemd' as phemd_1.2.0.zip
* DONE (phemd)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'phemd' successfully unpacked and MD5 sums checked