Package: oneSENSE

Version: 1.8.0

Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:oneSENSE.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings oneSENSE_1.8.0.tar.gz

StartedAt: 2020-04-15 05:14:10 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 05:16:03 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 113.3 seconds

RetCode: 1

Status:  ERROR

CheckDir: oneSENSE.Rcheck

Warnings: NA

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### Running command:
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###   C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:oneSENSE.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings oneSENSE_1.8.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/oneSENSE.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'oneSENSE/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'oneSENSE' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'oneSENSE' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... WARNING
Found the following significant warnings:

  Warning: 'export' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU or elapsed time > 5s
                user system elapsed
OneSmapperFreq2 2.77   0.23   15.35
OneSmapperFlour 0.01   0.03   19.52
** running examples for arch 'x64' ... ERROR
Running examples in 'oneSENSE-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: OneSmapperFlour
> ### Title: Median heatplot generation
> ### Aliases: OneSmapperFlour
> 
> ### ** Examples
> 
> webshot::install_phantomjs()
Error in if (is_phantomjs_version_latest(version) && !force) { : 
  missing value where TRUE/FALSE needed
Calls: <Anonymous>
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.10-bioc/meat/oneSENSE.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/oneSENSE_1.8.0.tar.gz && rm -rf oneSENSE.buildbin-libdir && mkdir oneSENSE.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oneSENSE.buildbin-libdir oneSENSE_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL oneSENSE_1.8.0.zip && rm oneSENSE_1.8.0.tar.gz oneSENSE_1.8.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1626k  100 1626k    0     0  7914k      0 --:--:-- --:--:-- --:--:-- 8051k

install for i386

* installing *source* package 'oneSENSE' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'oneSENSE'
    finding HTML links ... done
    FCStSNE                                 html  
    OneSmapperFlour                         html  
    OneSmapperFreq1                         html  
    OneSmapperFreq2                         html  
    getCoords                               html  
    getParameters                           html  
    oneSENSE_GUI                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'oneSENSE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'oneSENSE' as oneSENSE_1.8.0.zip
* DONE (oneSENSE)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'oneSENSE' successfully unpacked and MD5 sums checked