Back to Multiple platform build/check report for BioC 3.10
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

INSTALL report for hiAnnotator on tokay1

This page was generated on 2020-04-15 12:23:01 -0400 (Wed, 15 Apr 2020).

Package 781/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hiAnnotator 1.20.0
Nirav V Malani
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/hiAnnotator
Branch: RELEASE_3_10
Last Commit: 5540ff6
Last Changed Date: 2019-10-29 13:08:58 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: hiAnnotator
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/hiAnnotator_1.20.0.tar.gz && rm -rf hiAnnotator.buildbin-libdir && mkdir hiAnnotator.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hiAnnotator.buildbin-libdir hiAnnotator_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL hiAnnotator_1.20.0.zip && rm hiAnnotator_1.20.0.tar.gz hiAnnotator_1.20.0.zip
StartedAt: 2020-04-14 20:03:14 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:03:59 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 45.2 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/hiAnnotator_1.20.0.tar.gz && rm -rf hiAnnotator.buildbin-libdir && mkdir hiAnnotator.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hiAnnotator.buildbin-libdir hiAnnotator_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL hiAnnotator_1.20.0.zip && rm hiAnnotator_1.20.0.tar.gz hiAnnotator_1.20.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  795k  100  795k    0     0  3840k      0 --:--:-- --:--:-- --:--:-- 3899k

install for i386

* installing *source* package 'hiAnnotator' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'hiAnnotator'
    finding HTML links ... done
    cleanColname                            html  
    doAnnotation                            html  
    dot-checkArgsSetDefaults                html  
    dot-mergeAndReturn                      html  
    genes                                   html  
    get2NearestFeature                      html  
    getFeatureCounts                        html  
    getFeatureCountsBig                     html  
    getLowestDists                          html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpqquu7k/R.INSTALL1d10a5664d3/hiAnnotator/man/getLowestDists.Rd:32: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpqquu7k/R.INSTALL1d10a5664d3/hiAnnotator/man/getLowestDists.Rd:19: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic
    getNearestFeature                       html  
    getRelevantCol                          html  
    getSitesInFeature                       html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpqquu7k/R.INSTALL1d10a5664d3/hiAnnotator/man/getSitesInFeature.Rd:38: file link 'findOverlaps' in package 'IRanges' does not exist and so has been treated as a topic
    getUCSCtable                            html  
    finding level-2 HTML links ... done

    getWindowLabel                          html  
    hiAnnotator                             html  
    makeChunks                              html  
    makeGRanges                             html  
    makeUCSCsession                         html  
    plotdisFeature                          html  
    sites                                   html  
    sites.ctrl                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'hiAnnotator' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hiAnnotator' as hiAnnotator_1.20.0.zip
* DONE (hiAnnotator)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'hiAnnotator' successfully unpacked and MD5 sums checked