Package: graper

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings graper_1.2.0.tar.gz

StartedAt: 2020-04-15 02:52:10 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 02:53:28 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 78.2 seconds

RetCode: 0

Status:  OK

CheckDir: graper.Rcheck

Warnings: 0

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings graper_1.2.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/graper.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.10-bioc/meat/graper.Rcheck/00check.log’
for details.

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL graper
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/RcppArmadillo/include" -I"/Library/Frameworks/R.framework/Versions/3.6/Resources/library/BH/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c fit_graper.cpp -o fit_graper.o
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

R version 3.6.3 (2020-02-29) -- "Holding the Windsock"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-853.991
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-587.512
ELB improved by 266.478

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.684
ELB improved by 59.8285

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-484.999
ELB improved by 42.6847

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.294
ELB improved by 21.705

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.61
ELB improved by 9.68386

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.369
ELB improved by 6.24087

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.756
ELB improved by 5.61316

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.828
ELB improved by 5.92835

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.41
ELB improved by 6.41753

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.06
ELB improved by 6.35033

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.846
ELB improved by 5.21448

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.389
ELB improved by 3.45627

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.359
ELB improved by 2.02991

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.146
ELB improved by 1.21306

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.354
ELB improved by 0.792777

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.784
ELB improved by 0.569131

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.345
ELB improved by 0.439894

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.986
ELB improved by 0.358382

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.683
ELB improved by 0.303244

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.418
ELB improved by 0.264454

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.181
ELB improved by 0.237172

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.962
ELB improved by 0.21893

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.754
ELB improved by 0.207895

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.553
ELB improved by 0.201109

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.36
ELB improved by 0.193223

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.182
ELB improved by 0.178567

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.025
ELB improved by 0.156464

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.893
ELB improved by 0.131982

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.783
ELB improved by 0.110262

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.69
ELB improved by 0.0930588

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.61
ELB improved by 0.079826

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.54
ELB improved by 0.0694804

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.479
ELB improved by 0.0611458

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.425
ELB improved by 0.0542448

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.377
ELB improved by 0.0484135

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.333
ELB improved by 0.0434158

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.294
ELB improved by 0.03909

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.259
ELB improved by 0.0353186

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.227
ELB improved by 0.0320119

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.198
ELB improved by 0.0290994

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.171
ELB improved by 0.026524

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.147
ELB improved by 0.024239

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.125
ELB improved by 0.0222054

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.104
ELB improved by 0.0203907

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.086
ELB improved by 0.0187671

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.068
ELB improved by 0.0173111

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.052
ELB improved by 0.0160026

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.037
ELB improved by 0.0148243

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.024
ELB improved by 0.0137612

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.011
ELB improved by 0.0128002

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.999
ELB improved by 0.01193

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.988
ELB improved by 0.0111407

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.977
ELB improved by 0.0104236

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.968
ELB improved by 0.00977097

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-835.246
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-597.673
ELB improved by 237.573

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-534.881
ELB improved by 62.7919

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-484.014
ELB improved by 50.8675

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.357
ELB improved by 26.6564

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.306
ELB improved by 10.0513

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.765
ELB improved by 4.54141

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.791
ELB improved by 2.97313

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.334
ELB improved by 2.45726

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.081
ELB improved by 2.2534

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.929
ELB improved by 2.15162

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.848
ELB improved by 2.08128

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.84
ELB improved by 2.00806

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.938
ELB improved by 1.90217

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.2
ELB improved by 1.73723

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.695
ELB improved by 1.50565

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.462
ELB improved by 1.23306

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.493
ELB improved by 0.968813

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.74
ELB improved by 0.753315

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.142
ELB improved by 0.59774

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.65
ELB improved by 0.49224

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.226
ELB improved by 0.423325

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.845
ELB improved by 0.381699

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.484
ELB improved by 0.360921

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.128
ELB improved by 0.355222

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.769
ELB improved by 0.35918

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.401
ELB improved by 0.367905

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.024
ELB improved by 0.377315

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.639
ELB improved by 0.384593

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.251
ELB improved by 0.388313

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.863
ELB improved by 0.388008

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.479
ELB improved by 0.383743

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.103
ELB improved by 0.376003

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.738
ELB improved by 0.365688

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.384
ELB improved by 0.353937

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.042
ELB improved by 0.341854

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.712
ELB improved by 0.330303

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.392
ELB improved by 0.319857

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.081
ELB improved by 0.31084

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.777
ELB improved by 0.303455

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.479
ELB improved by 0.297996

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.184
ELB improved by 0.295225

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.887
ELB improved by 0.297027

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.58
ELB improved by 0.307218

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.249
ELB improved by 0.330573

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.886
ELB improved by 0.363728

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.504
ELB improved by 0.381313

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.145
ELB improved by 0.359547

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.832
ELB improved by 0.313258

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.565
ELB improved by 0.266061

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.34
ELB improved by 0.225814

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.147
ELB improved by 0.192667

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.981
ELB improved by 0.165965

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.835
ELB improved by 0.145564

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.704
ELB improved by 0.131472

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.581
ELB improved by 0.123233

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.461
ELB improved by 0.119293

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.345
ELB improved by 0.116748

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.233
ELB improved by 0.112186

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.129
ELB improved by 0.103434

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.038
ELB improved by 0.0906094

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.963
ELB improved by 0.0755825

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.902
ELB improved by 0.060687

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.855
ELB improved by 0.0476437

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.817
ELB improved by 0.0371655

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.788
ELB improved by 0.0291855

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.765
ELB improved by 0.0232768

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.746
ELB improved by 0.0189483

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.73
ELB improved by 0.015774

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.717
ELB improved by 0.013424

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.705
ELB improved by 0.0116567

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.695
ELB improved by 0.0103004

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.686
ELB improved by 0.00923554

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-851.222
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-577.301
ELB improved by 273.921

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-517.549
ELB improved by 59.7523

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-475.909
ELB improved by 41.64

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.919
ELB improved by 19.9903

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.339
ELB improved by 8.57976

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.503
ELB improved by 4.83626

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.433
ELB improved by 4.06961

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.182
ELB improved by 4.25089

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.405
ELB improved by 4.7773

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.127
ELB improved by 5.27808

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.829
ELB improved by 5.29752

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.261
ELB improved by 4.56849

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.896
ELB improved by 3.36516

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.661
ELB improved by 2.23432

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.198
ELB improved by 1.46351

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.182
ELB improved by 1.01621

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.414
ELB improved by 0.768127

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.787
ELB improved by 0.626891

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.247
ELB improved by 0.539196

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.77
ELB improved by 0.477277

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.34
ELB improved by 0.430449

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.943
ELB improved by 0.396766

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.568
ELB improved by 0.37485

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.206
ELB improved by 0.361626

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.853
ELB improved by 0.353886

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.503
ELB improved by 0.349379

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.156
ELB improved by 0.34685

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.811
ELB improved by 0.345773

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.464
ELB improved by 0.346121

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.116
ELB improved by 0.348228

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.764
ELB improved by 0.352691

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.403
ELB improved by 0.360262

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.032
ELB improved by 0.371646

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.645
ELB improved by 0.387066

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.239
ELB improved by 0.405573

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.814
ELB improved by 0.424505

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.374
ELB improved by 0.440157

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.924
ELB improved by 0.449903

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.471
ELB improved by 0.453514

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.019
ELB improved by 0.451739

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.575
ELB improved by 0.444233

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.145
ELB improved by 0.429534

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.739
ELB improved by 0.406593

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.363
ELB improved by 0.376231

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.021
ELB improved by 0.341832

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.712
ELB improved by 0.309178

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.426
ELB improved by 0.285863

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.145
ELB improved by 0.280905

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.843
ELB improved by 0.301462

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.51
ELB improved by 0.333237

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.192
ELB improved by 0.318019

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.959
ELB improved by 0.232899

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.815
ELB improved by 0.144179

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.726
ELB improved by 0.0894746

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.665
ELB improved by 0.0602971

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.621
ELB improved by 0.0442256

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.586
ELB improved by 0.0345919

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.558
ELB improved by 0.0283085

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.534
ELB improved by 0.0239138

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.514
ELB improved by 0.0206656

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.495
ELB improved by 0.0181575

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.479
ELB improved by 0.0161531

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.465
ELB improved by 0.0145075

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.452
ELB improved by 0.0131275

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.44
ELB improved by 0.0119513

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.429
ELB improved by 0.0109359

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.419
ELB improved by 0.0100505

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.409
ELB improved by 0.00927245

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-848.892
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-599.408
ELB improved by 249.485

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-537.792
ELB improved by 61.6156

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-487.707
ELB improved by 50.0851

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.808
ELB improved by 27.8986

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.813
ELB improved by 11.9949

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.782
ELB improved by 6.03112

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.378
ELB improved by 4.40445

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.359
ELB improved by 4.01889

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.362
ELB improved by 3.9967

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.433
ELB improved by 3.9294

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.83
ELB improved by 3.60326

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.805
ELB improved by 3.02409

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.469
ELB improved by 2.33636

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.79
ELB improved by 1.67949

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.627
ELB improved by 1.16223

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.809
ELB improved by 0.818005

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.204
ELB improved by 0.605341

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.735
ELB improved by 0.46944

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.358
ELB improved by 0.376133

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.047
ELB improved by 0.311414

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.779
ELB improved by 0.268195

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.539
ELB improved by 0.239993

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.317
ELB improved by 0.221486

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.108
ELB improved by 0.209211

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.907
ELB improved by 0.201171

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.711
ELB improved by 0.196258

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.517
ELB improved by 0.193872

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.323
ELB improved by 0.193726

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.127
ELB improved by 0.195755

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.927
ELB improved by 0.200071

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.72
ELB improved by 0.20693

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.504
ELB improved by 0.216652

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.274
ELB improved by 0.22947

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.029
ELB improved by 0.245304

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.765
ELB improved by 0.263618

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.482
ELB improved by 0.283606

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.177
ELB improved by 0.304752

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.85
ELB improved by 0.327249

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.498
ELB improved by 0.351876

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.118
ELB improved by 0.379562

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.707
ELB improved by 0.410983

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.261
ELB improved by 0.446133

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.778
ELB improved by 0.483629

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.258
ELB improved by 0.519899

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.709
ELB improved by 0.548993

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.145
ELB improved by 0.563939

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.585
ELB improved by 0.559507

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.05
ELB improved by 0.53476

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.556
ELB improved by 0.493945

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.111
ELB improved by 0.445803

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.708
ELB improved by 0.402482

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.328
ELB improved by 0.379993

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.928
ELB improved by 0.400678

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.446
ELB improved by 0.481313

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.879
ELB improved by 0.566798

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.328
ELB improved by 0.550975

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.871
ELB improved by 0.457646

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.516
ELB improved by 0.354397

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.243
ELB improved by 0.273707

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.019
ELB improved by 0.223952

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.829
ELB improved by 0.189621

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.678
ELB improved by 0.15103

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.569
ELB improved by 0.108739

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.495
ELB improved by 0.0745404

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.442
ELB improved by 0.0523733

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.403
ELB improved by 0.0392294

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.372
ELB improved by 0.0313345

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.346
ELB improved by 0.0262276

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.323
ELB improved by 0.0226046

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.303
ELB improved by 0.0198246

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.286
ELB improved by 0.0175737

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.27
ELB improved by 0.0156908

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.256
ELB improved by 0.0140855

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.243
ELB improved by 0.0127014

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.232
ELB improved by 0.0114996

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.221
ELB improved by 0.0104512

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.212
ELB improved by 0.00953324

ELB converged
══ testthat results  ═══════════════════════════════════════════════════════════
[ OK: 24 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ]
> 
> proc.time()
   user  system elapsed 
  3.283   0.242   3.508 

name	user	system	elapsed
coef.graper	0.071	0.014	0.088
getPIPs	0.065	0.013	0.079
graper	0.108	0.019	0.126
makeExampleData	0.015	0.002	0.018
makeExampleDataWithUnequalGroups	0.017	0.002	0.021
plotELBO	0.341	0.027	0.368
plotGroupPenalties	1.088	0.057	1.153
plotPosterior	0.927	0.024	0.958
predict.graper	2.639	0.057	2.718
print.graper	0.060	0.012	0.071