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BUILD BIN report for flowViz on tokay1

This page was generated on 2020-04-15 12:17:52 -0400 (Wed, 15 Apr 2020).

Package 607/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowViz 1.50.0
Mike Jiang
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/flowViz
Branch: RELEASE_3_10
Last Commit: 078098c
Last Changed Date: 2019-10-29 13:07:45 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowViz
Version: 1.50.0
Command: rm -rf flowViz.buildbin-libdir && mkdir flowViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowViz.buildbin-libdir flowViz_1.50.0.tar.gz
StartedAt: 2020-04-15 08:44:44 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:45:25 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 40.7 seconds
RetCode: 0
Status:  OK  
PackageFile: flowViz_1.50.0.zip
PackageFileSize: 977.2 KiB

Command output

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### Running command:
###
###   rm -rf flowViz.buildbin-libdir && mkdir flowViz.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowViz.buildbin-libdir flowViz_1.50.0.tar.gz
###
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install for i386

* installing *source* package 'flowViz' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'densityplot' with signature 'x="formula",data="view"': no definition for class "view"
in method for 'densityplot' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet"
in method for 'densityplot' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList"
in method for 'histogram' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet"
in method for 'histogram' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList"
in method for 'glines' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter"
in method for 'glines' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter"
in method for 'glines' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter"
in method for 'glpoints' with signature 'x="norm2Filter",data="flowFrame",channels="character"': no definition for class "norm2Filter"
in method for 'glpolygon' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter"
in method for 'glpolygon' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter"
in method for 'glpolygon' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter"
in method for 'gpoints' with signature 'x="norm2Filter",data="flowFrame",channels="character"': no definition for class "norm2Filter"
in method for 'gpolygon' with signature 'x="norm2Filter",data="ANY"': no definition for class "norm2Filter"
in method for 'gpolygon' with signature 'x="norm2Filter",data="logicalFilterResult"': no definition for class "norm2Filter"
in method for 'gpolygon' with signature 'x="norm2Filter",data="flowFrame"': no definition for class "norm2Filter"
in method for 'xyplot' with signature 'x="formula",data="view"': no definition for class "view"
in method for 'xyplot' with signature 'x="view",data="missing"': no definition for class "view"
in method for 'xyplot' with signature 'x="formula",data="gateView"': no definition for class "gateView"
in method for 'xyplot' with signature 'x="formula",data="ncdfFlowSet"': no definition for class "ncdfFlowSet"
in method for 'xyplot' with signature 'x="formula",data="ncdfFlowList"': no definition for class "ncdfFlowList"
** help
*** installing help indices
  converting help for package 'flowViz'
    finding HTML links ... done
    addName-methods                         html  
    contour-methods                         html  
    densityplot                             html  
    dot-process_flowFrame_overlay           html  
    dot-process_overlay_flowSet             html  
    ecdfplot                                html  
    flowPlot                                html  
    flowViz-package                         html  
    flowViz.par.get                         html  
    glines-methods                          html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glines-methods.Rd:87: file link 'kmeansFilter' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glines-methods.Rd:99: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glines-methods.Rd:106: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glines-methods.Rd:113: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glines-methods.Rd:120: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
    glpoints-methods                        html  
    glpolygon-methods                       html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glpolygon-methods.Rd:118: file link 'kmeansFilter' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glpolygon-methods.Rd:130: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glpolygon-methods.Rd:137: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glpolygon-methods.Rd:144: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/glpolygon-methods.Rd:151: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
    gpoints-methods                         html  
    gpolygon-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/gpolygon-methods.Rd:111: file link 'kmeansFilter' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/gpolygon-methods.Rd:123: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/gpolygon-methods.Rd:130: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/gpolygon-methods.Rd:137: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/gpolygon-methods.Rd:144: file link 'ellipsoidGate' in package 'flowCore' does not exist and so has been treated as a topic
    lattice-methods                         html  
    plot                                    html  
    splom                                   html  
    timeLinePlot                            html  
    xyplot                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/xyplot.Rd:115: file link 'filtersList-class' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6HGszX/R.INSTALL371875c93018/flowViz/man/xyplot.Rd:185: file link 'sqrt' in package 'base' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'flowViz' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowViz' as flowViz_1.50.0.zip
* DONE (flowViz)