Yongchao Ge
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/flowPeaks |
| Branch: RELEASE_3_10 |
| Last Commit: f6beb93 |
| Last Changed Date: 2019-10-29 13:08:32 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:20:43 -0400 (Wed, 15 Apr 2020).
| Package 595/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowPeaks 1.32.0 Yongchao Ge
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: flowPeaks |
| Version: 1.32.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/flowPeaks_1.32.0.tar.gz && rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.32.0.zip && rm flowPeaks_1.32.0.tar.gz flowPeaks_1.32.0.zip |
| StartedAt: 2020-04-14 18:29:09 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 18:30:44 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 95.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/flowPeaks_1.32.0.tar.gz && rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowPeaks.buildbin-libdir flowPeaks_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL flowPeaks_1.32.0.zip && rm flowPeaks_1.32.0.tar.gz flowPeaks_1.32.0.zip
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100 908k 100 908k 0 0 2753k 0 --:--:-- --:--:-- --:--:-- 2769k
install for i386
* installing *source* package 'flowPeaks' ...
** using staged installation
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386/Rscript.exe" "../tools/winlibs.R"
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(levels.size()<(i+1)){
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c kmns.cpp -o kmns.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/i386 -lgsl -lgslcblas -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/flowPeaks.buildbin-libdir/00LOCK-flowPeaks/00new/flowPeaks/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowPeaks'
finding HTML links ... done
adjust.flowPeaks html
assign.flowPeaks html
barcode html
concave html
evalCluster html
flowPeaks html
plot.flowPeaks html
print.flowPeaks html
summary.flowPeaks html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowPeaks' ...
** libs
rm -f flowPeaks.dll Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o
"C:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64/Rscript.exe" "../tools/winlibs.R"
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c Rpack.cpp -o Rpack.o
Rpack.cpp: In function 'void Rpack_relevel(int*, int*, int*, int*, int*, int*)':
Rpack.cpp:141:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if(levels.size()<(i+1)){
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c Rregistrate.cpp -o Rregistrate.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c flowPeaks.cpp -o flowPeaks.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c func_collect.cpp -o func_collect.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c func_collect_supp.cpp -o func_collect_supp.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c gvector_gmatrix.cpp -o gvector_gmatrix.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c kd_tree.cpp -o kd_tree.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -I/src/include -I../windows/gsl-master/include/gsl -O2 -Wall -mtune=core2 -c kmns.cpp -o kmns.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowPeaks.dll tmp.def Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L../windows/gsl-master/lib/x64 -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPeaks' as flowPeaks_1.32.0.zip
* DONE (flowPeaks)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'flowPeaks' successfully unpacked and MD5 sums checked