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BUILD BIN report for diffuStats on tokay1

This page was generated on 2020-04-15 12:28:44 -0400 (Wed, 15 Apr 2020).

Package 459/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
diffuStats 1.6.0
Sergio Picart-Armada
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/diffuStats
Branch: RELEASE_3_10
Last Commit: 5a93ba6
Last Changed Date: 2019-10-29 13:10:33 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: diffuStats
Version: 1.6.0
Command: rm -rf diffuStats.buildbin-libdir && mkdir diffuStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffuStats.buildbin-libdir diffuStats_1.6.0.tar.gz
StartedAt: 2020-04-15 08:35:58 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:37:05 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 66.7 seconds
RetCode: 0
Status:  OK  
PackageFile: diffuStats_1.6.0.zip
PackageFileSize: 1.493 MiB

Command output

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### Running command:
###
###   rm -rf diffuStats.buildbin-libdir && mkdir diffuStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffuStats.buildbin-libdir diffuStats_1.6.0.tar.gz
###
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install for i386

* installing *source* package 'diffuStats' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mtune=core2 -c diffuse_parallel.cpp -o diffuse_parallel.o
diffuse_parallel.cpp: In function 'arma::sp_mat convertSparse(Rcpp::S4)':
diffuse_parallel.cpp:28:84: warning: 'static eT* arma::memory::acquire_chunked(arma::uword) [with eT = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include/armadillo_bits/memory.hpp:117) [-Wdeprecated-declarations]
   arma::access::rw(res.values) = arma::memory::acquire_chunked<double>(x.size() + 1);
                                                                                    ^
diffuse_parallel.cpp:32:94: warning: 'static eT* arma::memory::acquire_chunked(arma::uword) [with eT = unsigned int; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include/armadillo_bits/memory.hpp:117) [-Wdeprecated-declarations]
   arma::access::rw(res.row_indices) = arma::memory::acquire_chunked<arma::uword>(i.size() + 1);
                                                                                              ^
diffuse_parallel.cpp: In function 'arma::sp_mat sparsify2(const mat&, int, const sp_mat&)':
diffuse_parallel.cpp:69:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < pos.size(); ++i) {
                     ^
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o diffuStats.dll tmp.def RcppExports.o diffuse_parallel.o init.o -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/lib/i386 -ltbb -ltbbmalloc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/diffuStats.buildbin-libdir/00LOCK-diffuStats/00new/diffuStats/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'diffuStats'
    finding HTML links ... done
    ParallelHeatrank                        html  
    checks                                  html  
    connect_undirected_graph                html  
    convertSparse                           html  
    default_graph_param                     html  
    diffuStats                              html  
    diffuse                                 html  
    diffuse_mc                              html  
    diffuse_raw                             html  
    generate_graph                          html  
    generate_input                          html  
    graph_toy                               html  
    is_kernel                               html  
    kernels                                 html  
    largest_cc                              html  
    metric_auc                              html  
    named.list                              html  
    perf                                    html  
    perf_eval                               html  
    perf_wilcox                             html  
    scores2colours                          html  
    scores2shapes                           html  
    serialHeatrank                          html  
    sparsify2                               html  
    to_list                                 html  
    to_x_from_list                          html  
    which_format                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'diffuStats' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mtune=core2 -c diffuse_parallel.cpp -o diffuse_parallel.o
diffuse_parallel.cpp: In function 'arma::sp_mat convertSparse(Rcpp::S4)':
diffuse_parallel.cpp:28:84: warning: 'static eT* arma::memory::acquire_chunked(arma::uword) [with eT = double; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include/armadillo_bits/memory.hpp:117) [-Wdeprecated-declarations]
   arma::access::rw(res.values) = arma::memory::acquire_chunked<double>(x.size() + 1);
                                                                                    ^
diffuse_parallel.cpp:32:94: warning: 'static eT* arma::memory::acquire_chunked(arma::uword) [with eT = unsigned int; arma::uword = unsigned int]' is deprecated (declared at C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include/armadillo_bits/memory.hpp:117) [-Wdeprecated-declarations]
   arma::access::rw(res.row_indices) = arma::memory::acquire_chunked<arma::uword>(i.size() + 1);
                                                                                              ^
diffuse_parallel.cpp: In function 'arma::sp_mat sparsify2(const mat&, int, const sp_mat&)':
diffuse_parallel.cpp:69:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for (int i = 0; i < pos.size(); ++i) {
                     ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include"   -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o diffuStats.dll tmp.def RcppExports.o diffuse_parallel.o init.o -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/diffuStats.buildbin-libdir/diffuStats/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'diffuStats' as diffuStats_1.6.0.zip
* DONE (diffuStats)