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BUILD BIN report for destiny on tokay1

This page was generated on 2020-04-15 12:25:17 -0400 (Wed, 15 Apr 2020).

Package 446/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
destiny 3.0.1
Philipp Angerer
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/destiny
Branch: RELEASE_3_10
Last Commit: 1348b8f
Last Changed Date: 2020-01-16 06:24:52 -0400 (Thu, 16 Jan 2020)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: destiny
Version: 3.0.1
Command: rm -rf destiny.buildbin-libdir && mkdir destiny.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=destiny.buildbin-libdir destiny_3.0.1.tar.gz
StartedAt: 2020-04-15 08:35:10 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 08:36:37 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 87.0 seconds
RetCode: 0
Status:  OK  
PackageFile: destiny_3.0.1.zip
PackageFileSize: 5.645 MiB

Command output

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###
### Running command:
###
###   rm -rf destiny.buildbin-libdir && mkdir destiny.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=destiny.buildbin-libdir destiny_3.0.1.tar.gz
###
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install for i386

* installing *source* package 'destiny' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/grDevices/include"   -I"C:/extsoft/include"  -ggdb   -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/grDevices/include"   -I"C:/extsoft/include"  -ggdb   -O2 -Wall  -mtune=core2 -c censoring.cpp -o censoring.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/grDevices/include"   -I"C:/extsoft/include"  -ggdb   -O2 -Wall  -mtune=core2 -c utils.cpp -o utils.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/destiny.buildbin-libdir/00LOCK-destiny/00new/destiny/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
From .checkSubclasses(): subclass "dgTMatrix" of class "dsparseMatrix" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x038c9ba8>, where2=<environment: namespace:destiny>]
From .checkSubclasses(): subclass "dtTMatrix" of class "dsparseMatrix" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x038c9ba8>, where2=<environment: namespace:destiny>]
From .checkSubclasses(): subclass "dsTMatrix" of class "dsparseMatrix" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x038c9ba8>, where2=<environment: namespace:destiny>]
From .checkSubclasses(): subclass "dgCMatrix" of class "dsparseMatrix" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x038c9ba8>, where2=<environment: namespace:destiny>]
From .checkSubclasses(): subclass "dtCMatrix" of class "dsparseMatrix" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x038c9ba8>, where2=<environment: namespace:destiny>]
From .checkSubclasses(): subclass "dsCMatrix" of class "dsparseMatrix" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x038c9ba8>, where2=<environment: namespace:destiny>]
From .checkSubclasses(): subclass "dgRMatrix" of class "dsparseMatrix" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x038c9ba8>, where2=<environment: namespace:destiny>]
From .checkSubclasses(): subclass "dtRMatrix" of class "dsparseMatrix" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x038c9ba8>, where2=<environment: namespace:destiny>]
From .checkSubclasses(): subclass "dsRMatrix" of class "dsparseMatrix" is not local and is not updated for new inheritance information currently; 
[where=<environment: 0x038c9ba8>, where2=<environment: namespace:destiny>]
** help
*** installing help indices
  converting help for package 'destiny'
    finding HTML links ... done
    DPT-matrix-methods                      html  
    DPT-methods                             html  
    DPT                                     html  
    DiffusionMap-accessors                  html  
    DiffusionMap-class                      html  
    DiffusionMap-methods                    html  
    ExpressionSet-helpers                   html  
    Gene-Relevance-methods                  html  
    Gene-Relevance-plotting                 html  
    Gene-Relevance                          html  
    Sigmas-class                            html  
    coercions                               html  
    colorlegend                             html  
    cube_helix                              html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpIlGuet/R.INSTALL164c62fb340e/destiny/man/cube_helix.Rd:53: file link 'hcl.colors' in package 'grDevices' does not exist and so has been treated as a topic
    destiny-deprecated                      html  
    destiny-generics                        html  
    destiny                                 html  
    dm_predict                              html  
    eig_decomp                              html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpIlGuet/R.INSTALL164c62fb340e/destiny/man/eig_decomp.Rd:26: file link 'set.seed' in package 'base' does not exist and so has been treated as a topic
    extractions                             html  
    find_dm_k                               html  
    find_sigmas                             html  
    find_tips                               html  
    guo                                     html  
    knn                                     html  
    l_which                                 html  
    plot.DPT                                html  
    plot.DiffusionMap                       html  
    plot.Sigmas                             html  
    projection_dist                         html  
    random_root                             html  
    updateObject-methods                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'destiny' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/grDevices/include"   -I"C:/extsoft/include"  -ggdb   -O2 -Wall  -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/grDevices/include"   -I"C:/extsoft/include"  -ggdb   -O2 -Wall  -mtune=core2 -c censoring.cpp -o censoring.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/grDevices/include"   -I"C:/extsoft/include"  -ggdb   -O2 -Wall  -mtune=core2 -c utils.cpp -o utils.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o destiny.dll tmp.def RcppExports.o censoring.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/destiny.buildbin-libdir/destiny/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'destiny' as destiny_3.0.1.zip
* DONE (destiny)