Package: aCGH

Version: 1.64.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/aCGH_1.64.0.tar.gz && rm -rf aCGH.buildbin-libdir && mkdir aCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aCGH.buildbin-libdir aCGH_1.64.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL aCGH_1.64.0.zip && rm aCGH_1.64.0.tar.gz aCGH_1.64.0.zip

StartedAt: 2020-04-14 18:54:25 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 18:55:06 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 40.6 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/aCGH_1.64.0.tar.gz && rm -rf aCGH.buildbin-libdir && mkdir aCGH.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=aCGH.buildbin-libdir aCGH_1.64.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL aCGH_1.64.0.zip && rm aCGH_1.64.0.tar.gz aCGH_1.64.0.zip
###
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install for i386

* installing *source* package 'aCGH' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -g3    -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c hmm.cpp -o hmm.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o aCGH.dll tmp.def hmm.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/aCGH.buildbin-libdir/00LOCK-aCGH/00new/aCGH/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'aCGH'
    finding HTML links ... done
    aCGH                                    html  
    aCGH.process                            html  
    aCGH.read.Sprocs                        html  
    aCGH.test                               html  
    clusterGenome                           html  
    colorectal                              html  
    computeSD.func                          html  
    fga.func                                html  
    find.genomic.events                     html  
    find.hmm.states                         html  
    findAber.func                           html  
    findAmplif.func                         html  
    findOutliers.func                       html  
    findTrans.func                          html  
    gainLoss                                html  
    heatmap                                 html  
    human.chrom.info.Jul03                  html  
    human.chrom.info.May04                  html  
    impute.HMM                              html  
    impute.lowess                           html  
    mergeFunc                               html  
    mergeLevels                             html  
    plotFreqStat                            html  
    plotGenome                              html  
    plotHmmStates                           html  
    plotSummaryProfile                      html  
    states.hmm.func                         html  
    summarize.clones                        html  
    threshold.func                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'aCGH' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -g3    -I"C:/extsoft/include"     -O2 -Wall  -mtune=core2 -c hmm.cpp -o hmm.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o aCGH.dll tmp.def hmm.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/aCGH.buildbin-libdir/aCGH/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'aCGH' as aCGH_1.64.0.zip
* DONE (aCGH)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'aCGH' successfully unpacked and MD5 sums checked