Renan Sauteraud
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/XCIR |
| Branch: RELEASE_3_10 |
| Last Commit: c20f64b |
| Last Changed Date: 2019-10-29 13:11:42 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:32:37 -0400 (Wed, 15 Apr 2020).
| Package 1809/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| XCIR 1.0.0 Renan Sauteraud
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: XCIR |
| Version: 1.0.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:XCIR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings XCIR_1.0.0.tar.gz |
| StartedAt: 2020-04-15 07:26:21 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 07:35:24 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 543.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: XCIR.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:XCIR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings XCIR_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/XCIR.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'XCIR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'XCIR' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'XCIR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
getXCIstate 19.44 8.09 24.42
plotQC 17.00 8.17 21.70
betaBinomXI 17.62 6.52 21.64
sample_clean 15.91 7.27 20.52
addAnno 3.00 0.58 8.46
annotateX 2.30 0.36 6.47
readVCF4 2.01 0.19 6.16
mart_genes 1.55 0.10 8.47
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotQC 13.18 2.80 12.50
getXCIstate 13.82 2.08 13.82
sample_clean 13.16 2.35 12.73
betaBinomXI 13.02 2.28 13.10
annotateX 2.45 0.23 6.29
addAnno 2.36 0.16 5.38
readRNASNPs 1.77 0.04 5.09
getGenicDP 1.66 0.12 6.18
mart_genes 1.35 0.02 5.13
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
XCIR.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/XCIR_1.0.0.tar.gz && rm -rf XCIR.buildbin-libdir && mkdir XCIR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XCIR.buildbin-libdir XCIR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL XCIR_1.0.0.zip && rm XCIR_1.0.0.tar.gz XCIR_1.0.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 466k 100 466k 0 0 1308k 0 --:--:-- --:--:-- --:--:-- 1324k
install for i386
* installing *source* package 'XCIR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'XCIR'
finding HTML links ... done
BetaConversion html
XCIR-package html
addAnno html
annotateX html
betaBinomXI html
consensusXCI html
getGenicDP html
getXCIstate html
mart_genes html
plotBBCellFrac html
plotQC html
readRNASNPs html
readVCF4 html
readXCI html
sample_clean html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'XCIR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XCIR' as XCIR_1.0.0.zip
* DONE (XCIR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'XCIR' successfully unpacked and MD5 sums checked
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XCIR.Rcheck/examples_i386/XCIR-Ex.timings
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XCIR.Rcheck/examples_x64/XCIR-Ex.timings
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