Package: TTMap

Version: 1.8.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TTMap.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TTMap_1.8.0.tar.gz

StartedAt: 2020-04-15 06:19:02 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 06:23:17 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 255.4 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: TTMap.Rcheck

Warnings: 1

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TTMap.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TTMap_1.8.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/TTMap.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TTMap/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TTMap’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TTMap’ can be installed ... WARNING
Found the following significant warnings:
  Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
See ‘/Users/biocbuild/bbs-3.10-bioc/meat/TTMap.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                                      user system elapsed
calcul_e                            16.732  0.371  17.289
ttmap_sgn_genes                     16.113  0.233  16.499
ttmap                               16.109  0.225  16.577
control_adjustment                  14.269  0.161  14.559
hyperrectangle_deviation_assessment 13.976  0.205  14.272
make_matrices                        4.868  0.135   5.023
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/Users/biocbuild/bbs-3.10-bioc/meat/TTMap.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL TTMap
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘TTMap’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning messages:
1: In rgl.init(initValue, onlyNULL) : RGL: GLX extension missing on server
2: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. 
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
** testing if installed package can be loaded from final location
Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
** testing if installed package keeps a record of temporary installation path
* DONE (TTMap)

name	user	system	elapsed
TTMap-package	0	0	0
calcul_e	16.732	0.371	17.289
control_adjustment	14.269	0.161	14.559
generate_correlation	0.002	0.001	0.002
hyperrectangle_deviation_assessment	13.976	0.205	14.272
make_matrices	4.868	0.135	5.023
ttmap	16.109	0.225	16.577
ttmap_sgn_genes	16.113	0.233	16.499
write_pcl	4.305	0.164	4.508