Rory Stark
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/SigCheck |
| Branch: RELEASE_3_10 |
| Last Commit: 09c2cce |
| Last Changed Date: 2019-10-29 13:09:05 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:23:55 -0400 (Wed, 15 Apr 2020).
| Package 1584/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SigCheck 2.18.0 Rory Stark
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: SigCheck |
| Version: 2.18.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SigCheck.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings SigCheck_2.18.0.tar.gz |
| StartedAt: 2020-04-15 06:37:00 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 06:47:44 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 643.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SigCheck.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SigCheck.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings SigCheck_2.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/SigCheck.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SigCheck/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SigCheck' version '2.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SigCheck' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
sigCheckKnown: no visible binding for global variable 'knownSignatures'
Undefined global functions or variables:
knownSignatures
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
sigCheckAll 96.33 6.76 103.11
sigCheckKnown 43.19 2.88 46.06
sigCheckPlot 11.63 0.96 12.58
sigCheckPermuted 11.54 0.90 12.49
sigCheck 10.29 1.55 12.97
sigCheckRandom 7.63 0.65 8.28
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
sigCheckAll 126.33 8.97 135.31
sigCheckKnown 64.70 4.28 68.99
sigCheck 17.08 0.92 18.03
sigCheckPermuted 13.35 1.16 14.50
sigCheckPlot 12.26 1.09 14.09
sigCheckRandom 8.67 0.77 9.44
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/SigCheck.Rcheck/00check.log'
for details.
SigCheck.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/SigCheck_2.18.0.tar.gz && rm -rf SigCheck.buildbin-libdir && mkdir SigCheck.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SigCheck.buildbin-libdir SigCheck_2.18.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL SigCheck_2.18.0.zip && rm SigCheck_2.18.0.tar.gz SigCheck_2.18.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 110k 100 110k 0 0 2566k 0 --:--:-- --:--:-- --:--:-- 2832k
install for i386
* installing *source* package 'SigCheck' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'signature' in package 'SigCheck'
** help
*** installing help indices
converting help for package 'SigCheck'
finding HTML links ... done
SigCheck-package html
finding level-2 HTML links ... done
SigCheckObject-class html
classifyResults html
knownSignatures html
nkiResults html
sigCheck html
sigCheckAll html
sigCheckKnown html
sigCheckPermuted html
sigCheckPlot html
sigCheckRandom html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SigCheck' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SigCheck' as SigCheck_2.18.0.zip
* DONE (SigCheck)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'SigCheck' successfully unpacked and MD5 sums checked
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SigCheck.Rcheck/examples_i386/SigCheck-Ex.timings
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SigCheck.Rcheck/examples_x64/SigCheck-Ex.timings
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