Marcus Rosenblatt
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/RNAsense |
| Branch: RELEASE_3_10 |
| Last Commit: dcdd4f1 |
| Last Changed Date: 2019-10-29 13:12:16 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:33:36 -0400 (Wed, 15 Apr 2020).
| Package 1457/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RNAsense 1.0.0 Marcus Rosenblatt
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: RNAsense |
| Version: 1.0.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RNAsense.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings RNAsense_1.0.0.tar.gz |
| StartedAt: 2020-04-15 06:12:23 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 06:37:21 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 1497.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: RNAsense.Rcheck |
| Warnings: 1 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:RNAsense.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings RNAsense_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/RNAsense.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RNAsense/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RNAsense' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RNAsense' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
combineResults: no visible binding for global variable 'resultSwitch'
combineResults: no visible binding for global variable 'resultFC'
combineResults : getFCupdown: no visible binding for global variable
'resultFC'
combineResults : getFCupdown: no visible binding for global variable
'name'
combineResults : getFCupdown: no visible binding for global variable
'FCdetect'
getFC: no visible binding for global variable 'mydata'
getFC: no visible binding for global variable 'analyzeConditions'
getFC: no visible binding for global variable 'times'
getSwitch: no visible binding for global variable 'mydata'
getSwitch: no visible binding for global variable 'times'
outputGeneTables: no visible binding for global variable
'resultCombined'
outputGeneTables: no visible binding for global variable 'times'
outputGeneTables: no visible binding for global variable
'analyzeConditions'
outputGeneTables: no visible binding for global variable 'timepoint'
outputGeneTables: no visible binding for global variable 'FCdown'
outputGeneTables: no visible binding for global variable 'FCup'
outputGeneTables: no visible binding for global variable 'experiment'
plotSSGS: no visible binding for global variable 'resultCombined'
plotSSGS: no visible binding for global variable 'times'
plotSSGS: no visible binding for global variable 'analyzeConditions'
plotSSGS : getFT: no visible binding for global variable 'result'
plotSSGS : getFT: no visible binding for global variable 'timepoint'
plotSSGS : getFT: no visible binding for global variable 'FCdown'
plotSSGS : getFT: no visible binding for global variable 'FCup'
plotSSGS : <anonymous> : <anonymous> : <anonymous> : <anonymous>: no
visible binding for global variable 'experiment'
plotSSGS: no visible binding for global variable 'xaxis'
plotSSGS: no visible binding for global variable 'cluster'
Undefined global functions or variables:
FCdetect FCdown FCup analyzeConditions cluster experiment mydata name
result resultCombined resultFC resultSwitch timepoint times xaxis
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'getFC.Rd':
'DataFrame'
Missing link or links in documentation object 'getSwitch.Rd':
'DataFrame'
See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
outputGeneTables 175.55 0.25 175.80
plotSSGS 168.79 0.29 169.20
combineResults 165.69 3.00 168.68
getFC 69.78 0.14 70.00
getSwitch 55.81 0.19 56.00
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
outputGeneTables 184.41 0.01 184.91
combineResults 176.93 1.45 178.39
plotSSGS 148.75 0.05 148.79
getSwitch 65.42 0.00 65.42
getFC 64.44 0.02 64.46
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/RNAsense.Rcheck/00check.log'
for details.
RNAsense.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/RNAsense_1.0.0.tar.gz && rm -rf RNAsense.buildbin-libdir && mkdir RNAsense.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RNAsense.buildbin-libdir RNAsense_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL RNAsense_1.0.0.zip && rm RNAsense_1.0.0.tar.gz RNAsense_1.0.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
84 815k 84 688k 0 0 2858k 0 --:--:-- --:--:-- --:--:-- 2902k
100 815k 100 815k 0 0 3372k 0 --:--:-- --:--:-- --:--:-- 3425k
install for i386
* installing *source* package 'RNAsense' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RNAsense'
finding HTML links ... done
MZsox html
finding level-2 HTML links ... done
combineResults html
getFC html
getSwitch html
outputGeneTables html
plotSSGS html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RNAsense' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RNAsense' as RNAsense_1.0.0.zip
* DONE (RNAsense)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'RNAsense' successfully unpacked and MD5 sums checked
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RNAsense.Rcheck/examples_i386/RNAsense-Ex.timings
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RNAsense.Rcheck/examples_x64/RNAsense-Ex.timings
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