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BUILD BIN report for QDNAseq on tokay1

This page was generated on 2020-04-15 12:22:44 -0400 (Wed, 15 Apr 2020).

Package 1339/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QDNAseq 1.22.0
Daoud Sie
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/QDNAseq
Branch: RELEASE_3_10
Last Commit: 679f388
Last Changed Date: 2019-10-29 13:08:53 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: QDNAseq
Version: 1.22.0
Command: rm -rf QDNAseq.buildbin-libdir && mkdir QDNAseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QDNAseq.buildbin-libdir QDNAseq_1.22.0.tar.gz
StartedAt: 2020-04-15 09:27:27 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 09:27:59 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 31.9 seconds
RetCode: 0
Status:  OK  
PackageFile: QDNAseq_1.22.0.zip
PackageFileSize: 1.403 MiB

Command output

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###
### Running command:
###
###   rm -rf QDNAseq.buildbin-libdir && mkdir QDNAseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=QDNAseq.buildbin-libdir QDNAseq_1.22.0.tar.gz
###
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install for i386

* installing *source* package 'QDNAseq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'QDNAseq'
    finding HTML links ... done
    LGG150                                  html  
    QDNAseq-defunct                         html  
    QDNAseq-package                         html  
    QDNAseqCopyNumbers                      html  
    QDNAseqReadCounts                       html  
    QDNAseqSignals                          html  
    addPhenodata                            html  
    applyFilters                            html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6H62ve/R.INSTALL19c017eb7f7d/QDNAseq/man/applyFilters.Rd:31: file link 'madDiff' in package 'matrixStats' does not exist and so has been treated as a topic
    binReadCounts                           html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6H62ve/R.INSTALL19c017eb7f7d/QDNAseq/man/binReadCounts.Rd:29: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
    callBins                                html  
    compareToReference                      html  
    correctBins                             html  
    createBins                              html  
    estimateCorrection                      html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6H62ve/R.INSTALL19c017eb7f7d/QDNAseq/man/estimateCorrection.Rd:43: file link 'madDiff' in package 'matrixStats' does not exist and so has been treated as a topic
    exportBins                              html  
    finding level-2 HTML links ... done

    frequencyPlot                           html  
    getBinAnnotations                       html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6H62ve/R.INSTALL19c017eb7f7d/QDNAseq/man/getBinAnnotations.Rd:48: file link 'AnnotatedDataFrame' in package 'Biobase' does not exist and so has been treated as a topic
    highlightFilters                        html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6H62ve/R.INSTALL19c017eb7f7d/QDNAseq/man/highlightFilters.Rd:32: file link 'madDiff' in package 'matrixStats' does not exist and so has been treated as a topic
    isobarPlot                              html  
    makeCgh                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6H62ve/R.INSTALL19c017eb7f7d/QDNAseq/man/makeCgh.Rd:37: file link 'cghRaw' in package 'CGHbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6H62ve/R.INSTALL19c017eb7f7d/QDNAseq/man/makeCgh.Rd:38: file link 'cghSeg' in package 'CGHbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp6H62ve/R.INSTALL19c017eb7f7d/QDNAseq/man/makeCgh.Rd:39: file link 'cghCall' in package 'CGHbase' does not exist and so has been treated as a topic
    noisePlot                               html  
    normalizeBins                           html  
    normalizeSegmentedBins                  html  
    plot                                    html  
    poolRuns                                html  
    segmentBins                             html  
    smoothOutlierBins                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'QDNAseq' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QDNAseq' as QDNAseq_1.22.0.zip
* DONE (QDNAseq)