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BUILD BIN report for Pbase on tokay1

This page was generated on 2020-04-15 12:23:11 -0400 (Wed, 15 Apr 2020).

Package 1233/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Pbase 0.26.0
Laurent Gatto
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/Pbase
Branch: RELEASE_3_10
Last Commit: fffa65a
Last Changed Date: 2019-10-29 13:09:00 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: Pbase
Version: 0.26.0
Command: rm -rf Pbase.buildbin-libdir && mkdir Pbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pbase.buildbin-libdir Pbase_0.26.0.tar.gz
StartedAt: 2020-04-15 09:21:13 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 09:22:19 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 66.3 seconds
RetCode: 0
Status:  OK  
PackageFile: Pbase_0.26.0.zip
PackageFileSize: 4.346 MiB

Command output

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### Running command:
###
###   rm -rf Pbase.buildbin-libdir && mkdir Pbase.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Pbase.buildbin-libdir Pbase_0.26.0.tar.gz
###
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install for i386

* installing *source* package 'Pbase' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Pbase'
    finding HTML links ... done
    Pparams-class                           html  
    Proteins-class                          html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMfX3UK/R.INSTALLcc81ce56bb9/Pbase/man/Proteins-class.Rd:121: file link 'proteins' in package 'ensembldb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMfX3UK/R.INSTALLcc81ce56bb9/Pbase/man/Proteins-class.Rd:126: file link 'listColumns' in package 'ensembldb' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMfX3UK/R.INSTALLcc81ce56bb9/Pbase/man/Proteins-class.Rd:232: file link 'cleave' in package 'cleaver' does not exist and so has been treated as a topic
    calculateHeavyLabels                    html  
    etrid2grl                               html  
    isReverse                               html  
    p                                       html  
    plotAsAnnotationTrack                   html  
    proteinCoding-methods                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'Pbase' is deprecated and will be removed from Bioconductor
  version 3.11
** testing if installed package can be loaded from final location
Warning: Package 'Pbase' is deprecated and will be removed from Bioconductor
  version 3.11
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Pbase' ...
** testing if installed package can be loaded
Warning: Package 'Pbase' is deprecated and will be removed from Bioconductor
  version 3.11
* MD5 sums
packaged installation of 'Pbase' as Pbase_0.26.0.zip
* DONE (Pbase)