James Collins
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/LOBSTAHS |
| Branch: RELEASE_3_10 |
| Last Commit: e6adc05 |
| Last Changed Date: 2019-10-29 13:09:52 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:26:56 -0400 (Wed, 15 Apr 2020).
| Package 914/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LOBSTAHS 1.12.0 James Collins
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: LOBSTAHS |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/LOBSTAHS_1.12.0.tar.gz && rm -rf LOBSTAHS.buildbin-libdir && mkdir LOBSTAHS.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL LOBSTAHS_1.12.0.zip && rm LOBSTAHS_1.12.0.tar.gz LOBSTAHS_1.12.0.zip |
| StartedAt: 2020-04-14 19:53:40 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:54:42 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 62.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/LOBSTAHS_1.12.0.tar.gz && rm -rf LOBSTAHS.buildbin-libdir && mkdir LOBSTAHS.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LOBSTAHS.buildbin-libdir LOBSTAHS_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL LOBSTAHS_1.12.0.zip && rm LOBSTAHS_1.12.0.tar.gz LOBSTAHS_1.12.0.zip
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install for i386
* installing *source* package 'LOBSTAHS' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning message:
replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
Creating a new generic function for 'polarity<-' in package 'LOBSTAHS'
** help
*** installing help indices
converting help for package 'LOBSTAHS'
finding HTML links ... done
LOBSet-class html
finding level-2 HTML links ... done
LOBSet html
LOBdbase-class html
LOBdbase html
LOBdefaults html
doLOBscreen html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMHdWr7/R.INSTALL62075626c2b/LOBSTAHS/man/doLOBscreen.Rd:20: file link 'findIsotopes' in package 'CAMERA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMHdWr7/R.INSTALL62075626c2b/LOBSTAHS/man/doLOBscreen.Rd:41: file link 'findIsotopes' in package 'CAMERA' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMHdWr7/R.INSTALL62075626c2b/LOBSTAHS/man/doLOBscreen.Rd:125: file link 'findIsotopes' in package 'CAMERA' does not exist and so has been treated as a topic
exportDBtoCSV html
extractLOBdbasedata html
generateLOBdbase html
getLOBpeaklist html
loadLOBdbase html
** building package indices
** installing vignettes
'LOBSTAHS.Rmd' using 'UTF-8'
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
Warning: multiple methods tables found for 'polarity<-'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
Warning: multiple methods tables found for 'polarity<-'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'LOBSTAHS' ...
** testing if installed package can be loaded
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
Warning: multiple methods tables found for 'polarity<-'
* MD5 sums
packaged installation of 'LOBSTAHS' as LOBSTAHS_1.12.0.zip
* DONE (LOBSTAHS)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'LOBSTAHS' successfully unpacked and MD5 sums checked