Thomas Riebenbauer
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/IPO |
| Branch: RELEASE_3_10 |
| Last Commit: 8a15918 |
| Last Changed Date: 2019-10-29 13:09:59 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:27:04 -0400 (Wed, 15 Apr 2020).
| Package 861/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| IPO 1.12.0 Thomas Riebenbauer
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: IPO |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/IPO_1.12.0.tar.gz && rm -rf IPO.buildbin-libdir && mkdir IPO.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IPO.buildbin-libdir IPO_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL IPO_1.12.0.zip && rm IPO_1.12.0.tar.gz IPO_1.12.0.zip |
| StartedAt: 2020-04-14 19:52:32 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:53:17 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 44.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/IPO_1.12.0.tar.gz && rm -rf IPO.buildbin-libdir && mkdir IPO.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IPO.buildbin-libdir IPO_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL IPO_1.12.0.zip && rm IPO_1.12.0.tar.gz IPO_1.12.0.zip
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install for i386
* installing *source* package 'IPO' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** help
*** installing help indices
converting help for package 'IPO'
finding HTML links ... done
IPO-package html
attachList html
calcPPS html
calculateXcmsSet html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpctwcMX/R.INSTALL14a46a60540f/IPO/man/calculateXcmsSet.Rd:19: file link 'findPeaks.centWave' in package 'xcms' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpctwcMX/R.INSTALL14a46a60540f/IPO/man/calculateXcmsSet.Rd:24: file link 'SerialParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpctwcMX/R.INSTALL14a46a60540f/IPO/man/calculateXcmsSet.Rd:25: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpctwcMX/R.INSTALL14a46a60540f/IPO/man/calculateXcmsSet.Rd:26: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpctwcMX/R.INSTALL14a46a60540f/IPO/man/calculateXcmsSet.Rd:53: file link 'findPeaks' in package 'xcms' does not exist and so has been treated as a topic
combineParams html
createModel html
decode html
findIsotopes.CAMERA html
findIsotopes.IPO html
getBbdParameter html
getCcdParameter html
getDefaultRetCorCenterSample html
getDefaultRetGroupStartingParams html
getDefaultXcmsSetStartingParams html
getNormalizedResponse html
getRGTVValues html
optimizeRetGroup html
optimizeXcmsSet html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpctwcMX/R.INSTALL14a46a60540f/IPO/man/optimizeXcmsSet.Rd:31: file link 'SerialParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpctwcMX/R.INSTALL14a46a60540f/IPO/man/optimizeXcmsSet.Rd:32: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpctwcMX/R.INSTALL14a46a60540f/IPO/man/optimizeXcmsSet.Rd:33: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
toMatrix html
typeCastParams html
writeParamsTable html
writeRScript html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'IPO' ...
** testing if installed package can be loaded
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
* MD5 sums
packaged installation of 'IPO' as IPO_1.12.0.zip
* DONE (IPO)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'IPO' successfully unpacked and MD5 sums checked