Karesh Arunakirinathan
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/FISHalyseR |
| Branch: RELEASE_3_10 |
| Last Commit: 87325e7 |
| Last Changed Date: 2019-10-29 13:09:15 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:24:44 -0400 (Wed, 15 Apr 2020).
| Package 573/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| FISHalyseR 1.20.0 Karesh Arunakirinathan
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: FISHalyseR |
| Version: 1.20.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:FISHalyseR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings FISHalyseR_1.20.0.tar.gz |
| StartedAt: 2020-04-15 03:10:24 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 03:11:42 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 78.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: FISHalyseR.Rcheck |
| Warnings: 3 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:FISHalyseR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings FISHalyseR_1.20.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/FISHalyseR.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FISHalyseR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'FISHalyseR' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FISHalyseR' can be installed ... WARNING
Found the following significant warnings:
Warning: replacing previous import 'EBImage::abind' by 'abind::abind' when loading 'FISHalyseR'
See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/FISHalyseR.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
computeIlluminationCorrection: warning in gblur(I, s = 5): partial
argument match of 's' to 'sigma'
GetDistances: no visible global function definition for 'na.exclude'
plotLabelMatrix: no visible global function definition for 'jpeg'
plotLabelMatrix: no visible global function definition for 'text'
plotLabelMatrix: no visible global function definition for 'dev.off'
processFISH: no visible global function definition for 'write.table'
Undefined global functions or variables:
dev.off jpeg na.exclude text write.table
Consider adding
importFrom("grDevices", "dev.off", "jpeg")
importFrom("graphics", "text")
importFrom("stats", "na.exclude")
importFrom("utils", "write.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... WARNING
Found the following significant warnings:
Warning: working directory was changed to 'C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp0GGr8BSampleFISH.jpg', resetting
** running examples for arch 'x64' ... WARNING
Found the following significant warnings:
Warning: working directory was changed to 'C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpExDi74SampleFISH.jpg', resetting
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 1 NOTE
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/FISHalyseR.Rcheck/00check.log'
for details.
FISHalyseR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/FISHalyseR_1.20.0.tar.gz && rm -rf FISHalyseR.buildbin-libdir && mkdir FISHalyseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FISHalyseR.buildbin-libdir FISHalyseR_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL FISHalyseR_1.20.0.zip && rm FISHalyseR_1.20.0.tar.gz FISHalyseR_1.20.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
6 232k 6 16384 0 0 413k 0 --:--:-- --:--:-- --:--:-- 444k
100 232k 100 232k 0 0 5839k 0 --:--:-- --:--:-- --:--:-- 6271k
install for i386
* installing *source* package 'FISHalyseR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'EBImage::abind' by 'abind::abind' when loading 'FISHalyseR'
** help
*** installing help indices
converting help for package 'FISHalyseR'
finding HTML links ... done
analyseParticles html
calculateMaxEntropy html
calculateThreshold html
computeIlluminationCorrection html
processFISH html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'EBImage::abind' by 'abind::abind' when loading 'FISHalyseR'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'EBImage::abind' by 'abind::abind' when loading 'FISHalyseR'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FISHalyseR' ...
** testing if installed package can be loaded
Warning: replacing previous import 'EBImage::abind' by 'abind::abind' when loading 'FISHalyseR'
* MD5 sums
packaged installation of 'FISHalyseR' as FISHalyseR_1.20.0.zip
* DONE (FISHalyseR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'FISHalyseR' successfully unpacked and MD5 sums checked
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FISHalyseR.Rcheck/examples_i386/FISHalyseR-Ex.timings
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FISHalyseR.Rcheck/examples_x64/FISHalyseR-Ex.timings
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