Felipe Albrecht
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/DeepBlueR |
| Branch: RELEASE_3_10 |
| Last Commit: a2bf161 |
| Last Changed Date: 2019-10-29 13:09:53 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:26:57 -0400 (Wed, 15 Apr 2020).
| Package 423/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DeepBlueR 1.12.0 Felipe Albrecht
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DeepBlueR |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/DeepBlueR_1.12.0.tar.gz && rm -rf DeepBlueR.buildbin-libdir && mkdir DeepBlueR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DeepBlueR.buildbin-libdir DeepBlueR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL DeepBlueR_1.12.0.zip && rm DeepBlueR_1.12.0.tar.gz DeepBlueR_1.12.0.zip |
| StartedAt: 2020-04-14 19:53:17 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:55:09 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 111.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/DeepBlueR_1.12.0.tar.gz && rm -rf DeepBlueR.buildbin-libdir && mkdir DeepBlueR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DeepBlueR.buildbin-libdir DeepBlueR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL DeepBlueR_1.12.0.zip && rm DeepBlueR_1.12.0.tar.gz DeepBlueR_1.12.0.zip
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install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'DeepBlueR/vignettes/DeepBlueR.Rmd' to 'DeepBlueR/README.md'
* installing *source* package 'DeepBlueR' ...
** using staged installation
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
Called method: deepblue_list_column_types
Reported status was: okay
Called method: deepblue_info
Reported status was: okay
** help
*** installing help indices
converting help for package 'DeepBlueR'
finding HTML links ... done
DeepBlueCommand-class html
deepblue_aggregate html
deepblue_batch_export_results html
deepblue_binning html
deepblue_cache_status html
deepblue_cancel_request html
deepblue_chromosomes html
deepblue_clear_cache html
deepblue_collection_experiments_count html
deepblue_column_types html
deepblue_commands html
deepblue_convert_to_df html
deepblue_convert_to_grange html
deepblue_count_gene_ontology_terms html
deepblue_count_regions html
deepblue_coverage html
deepblue_delete_request_from_cache html
deepblue_diff html
deepblue_distinct_column_values html
deepblue_download_request_data-DeepBlueCommand-method
html
deepblue_download_request_data html
deepblue_echo html
deepblue_enrich_regions_fast html
deepblue_enrich_regions_go_terms html
deepblue_enrich_regions_overlap html
deepblue_export_bed html
deepblue_export_meta_data html
deepblue_export_tab html
deepblue_extend html
deepblue_extract_ids html
deepblue_extract_names html
deepblue_faceting_experiments html
deepblue_filter_regions html
deepblue_find_motif html
deepblue_flank html
deepblue_format_object_size html
deepblue_get_biosource_children html
deepblue_get_biosource_parents html
deepblue_get_biosource_related html
deepblue_get_biosource_synonyms html
deepblue_get_db html
deepblue_get_experiments_by_query html
deepblue_get_regions html
deepblue_get_request_data html
deepblue_info html
deepblue_input_regions html
deepblue_intersection html
deepblue_is_biosource html
deepblue_liftover html
deepblue_list_annotations html
deepblue_list_biosources html
deepblue_list_cached_requests html
deepblue_list_column_types html
deepblue_list_epigenetic_marks html
deepblue_list_experiments html
deepblue_list_expressions html
deepblue_list_gene_models html
deepblue_list_genes html
deepblue_list_genomes html
deepblue_list_in_use html
deepblue_list_projects html
deepblue_list_recent_experiments html
deepblue_list_requests html
deepblue_list_samples html
deepblue_list_similar_biosources html
deepblue_list_similar_epigenetic_marks
html
deepblue_list_similar_experiments html
deepblue_list_similar_genomes html
deepblue_list_similar_projects html
deepblue_list_similar_techniques html
deepblue_list_techniques html
deepblue_merge_queries html
deepblue_meta_data_to_table html
deepblue_name_to_id html
deepblue_options html
deepblue_overlap html
deepblue_parse_gtf html
deepblue_preview_experiment html
deepblue_query_cache html
deepblue_query_experiment_type html
deepblue_reset_options html
deepblue_score_matrix html
deepblue_search html
deepblue_select_annotations html
deepblue_select_column html
deepblue_select_experiments html
deepblue_select_expressions html
deepblue_select_genes html
deepblue_select_regions html
deepblue_switch_get_request_data html
deepblue_tiling_regions html
deepblue_wait_request html
show-DeepBlueCommand-method html
xml.rpc html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'DeepBlueR/vignettes/DeepBlueR.Rmd' to 'DeepBlueR/README.md'
* installing *source* package 'DeepBlueR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DeepBlueR' as DeepBlueR_1.12.0.zip
* DONE (DeepBlueR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'DeepBlueR' successfully unpacked and MD5 sums checked