VJ Carey
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/BiocOncoTK |
| Branch: RELEASE_3_10 |
| Last Commit: ca628a5 |
| Last Changed Date: 2019-10-29 13:11:10 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:30:28 -0400 (Wed, 15 Apr 2020).
| Package 154/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| BiocOncoTK 1.6.0 VJ Carey
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: BiocOncoTK |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BiocOncoTK_1.6.0.tar.gz && rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BiocOncoTK_1.6.0.zip && rm BiocOncoTK_1.6.0.tar.gz BiocOncoTK_1.6.0.zip |
| StartedAt: 2020-04-14 20:27:19 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:29:21 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 122.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BiocOncoTK_1.6.0.tar.gz && rm -rf BiocOncoTK.buildbin-libdir && mkdir BiocOncoTK.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocOncoTK.buildbin-libdir BiocOncoTK_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BiocOncoTK_1.6.0.zip && rm BiocOncoTK_1.6.0.tar.gz BiocOncoTK_1.6.0.zip
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install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/BiocOncoTK.Rmd' to 'BiocOncoTK/README.md'
* installing *source* package 'BiocOncoTK' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BiocOncoTK'
finding HTML links ... done
CCLE_DRUG_BROAD html
MSIsensor.10k html
TcgaMutCounts html
TcgaNIndWithAnyMut html
annotTabs html
bindMSI html
bipg_tests html
brcaMAE html
buildPancanSE html
cell_70138 html
clueDemos html
clueServiceNames html
darmGBMcls html
dingMSI html
featIDMapper html
fireMSI html
get_plates html
ggFeatDens html
ggFeatureSegs html
ggMutDens html
icd10_c html
k23sig html
kang_DNArepair html
loadPatel html
log10pl1 html
map_tcga_ncit html
mc3toGR html
molpo_3utr html
molpo_5utr html
molpo_CDS html
molpo_WGS html
multiviz html
oncoPrintISB html
pancan.clin.varnames html
pancan_BQ html
finding level-2 HTML links ... done
pancan_app html
pancan_clinicalTabVarnames html
pancan_longname html
pancan_sampTypeMap html
pancan_tabulate html
patient_to_tumor_code html
pertClasses html
pert_70138 html
query_clue html
reexports html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp88FHYf/R.INSTALL21f85fad1ff6/BiocOncoTK/man/reexports.Rd:19: file link '%>%' in package 'magrittr' does not exist and so has been treated as a topic
replaceRownames html
small_msi html
tumNorSet html
utils html
viz_msi_raw html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'BiocOncoTK/vignettes/BiocOncoTK.Rmd' to 'BiocOncoTK/README.md'
* installing *source* package 'BiocOncoTK' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocOncoTK' as BiocOncoTK_1.6.0.zip
* DONE (BiocOncoTK)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'BiocOncoTK' successfully unpacked and MD5 sums checked