| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:18:15 -0400 (Wed, 15 Apr 2020).
| Package 622/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| gaga 2.32.0 David Rossell
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
| Package: gaga |
| Version: 2.32.0 |
| Command: rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.32.0.tar.gz |
| StartedAt: 2020-04-15 08:45:35 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 08:46:02 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 27.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: gaga_2.32.0.zip |
| PackageFileSize: 685.8 KiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gaga.buildbin-libdir gaga_2.32.0.tar.gz
###
##############################################################################
##############################################################################
install for i386
* installing *source* package 'gaga' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c cseqdesma.c -o cseqdesma.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c cstat.c -o cstat.o
cstat.c: In function 'qnormC':
cstat.c:1638:3: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized]
return y;
^
cstat.c: In function 'pnormC':
cstat.c:1552:5: warning: 'p' may be used uninitialized in this function [-Wmaybe-uninitialized]
p, q, mean,sd,bound,x,z;
^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/gaga.buildbin-libdir/00LOCK-gaga/00new/gaga/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gaga'
finding HTML links ... done
buildPatterns html
checkfit html
classpred html
dcgamma html
findgenes html
fitGG html
forwsimDiffExpr html
geneclus html
getpar html
parest html
plotForwSim html
posmeansGG html
powclasspred html
powfindgenes html
print.gagaclus html
print.gagafit html
print.gagahyp html
seqBoundariesGrid html
simGG html
simnewsamples html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'gaga' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cseqdesma.c -o cseqdesma.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cstat.c -o cstat.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/gaga.buildbin-libdir/gaga/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gaga' as gaga_2.32.0.zip
* DONE (gaga)