Hannah Pliner
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/cicero |
| Branch: RELEASE_3_10 |
| Last Commit: 1bf63f3 |
| Last Changed Date: 2020-03-10 08:57:42 -0400 (Tue, 10 Mar 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:31:12 -0400 (Wed, 15 Apr 2020).
| Package 291/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| cicero 1.4.4 Hannah Pliner
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: cicero |
| Version: 1.4.4 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/cicero_1.4.4.tar.gz && rm -rf cicero.buildbin-libdir && mkdir cicero.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cicero.buildbin-libdir cicero_1.4.4.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL cicero_1.4.4.zip && rm cicero_1.4.4.tar.gz cicero_1.4.4.zip |
| StartedAt: 2020-04-14 20:18:58 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:20:27 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 88.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/cicero_1.4.4.tar.gz && rm -rf cicero.buildbin-libdir && mkdir cicero.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cicero.buildbin-libdir cicero_1.4.4.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL cicero_1.4.4.zip && rm cicero_1.4.4.tar.gz cicero_1.4.4.zip
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install for i386
* installing *source* package 'cicero' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cicero'
finding HTML links ... done
aggregate_by_cell_bin html
aggregate_nearby_peaks html
annotate_cds_by_site html
assemble_connections html
build_gene_activity_matrix html
cell_data html
cicero-package html
cicero_data html
compare_connections html
df_for_coords html
estimate_distance_parameter html
find_overlapping_ccans html
find_overlapping_coordinates html
gene_annotation_sample html
generate_ccans html
generate_cicero_models html
human.hg19.genome html
make_atac_cds html
make_cicero_cds html
make_sparse_matrix html
normalize_gene_activities html
plot_accessibility_in_pseudotime html
plot_connections html
ranges_for_coords html
run_cicero html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cicero' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cicero' as cicero_1.4.4.zip
* DONE (cicero)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'cicero' successfully unpacked and MD5 sums checked