Robert Scharpf
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/VanillaICE |
| Branch: RELEASE_3_10 |
| Last Commit: 66aba0a |
| Last Changed Date: 2019-10-29 13:07:52 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:18:08 -0400 (Wed, 15 Apr 2020).
| Package 1782/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| VanillaICE 1.48.0 Robert Scharpf
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: VanillaICE |
| Version: 1.48.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/VanillaICE_1.48.0.tar.gz && rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL VanillaICE_1.48.0.zip && rm VanillaICE_1.48.0.tar.gz VanillaICE_1.48.0.zip |
| StartedAt: 2020-04-14 20:03:41 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:05:20 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 98.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/VanillaICE_1.48.0.tar.gz && rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.48.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL VanillaICE_1.48.0.zip && rm VanillaICE_1.48.0.tar.gz VanillaICE_1.48.0.zip
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install for i386
* installing *source* package 'VanillaICE' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rinit.c -o rinit.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c viterbi.c -o viterbi.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'distance' in package 'VanillaICE'
** help
*** installing help indices
converting help for package 'VanillaICE'
finding HTML links ... done
ArrayViews-class html
CopyNumScanParams html
finding level-2 HTML links ... done
EmissionParam-methods html
FilterParam-class html
HMM html
HMMList-class html
HMMList html
HmmGRanges-methods html
HmmParam html
HmmTrellisParam html
IO html
IdiogramParam-class html
IdiogramParams-class html
LogLik-class html
LogLik html
LowLevelSummaries html
NA_filter html
SnpArrayExperiment-class html
SnpExperiment html
SnpGRanges html
TransitionParam html
VanillaICE html
Viterbi-methods html
acf2 html
baumWelchUpdate html
calculateEmission html
cnvFilter html
doUpdate html
dropDuplicatedMapLocs html
dropSexChrom html
emission html
emissionParam html
filters html
getExampleSnpExperiment html
getHmmParams html
hmm2 html
hmmResults html
isHeterozygous html
matrixOrNULL-class html
numberFeatures html
parseSourceFile html
parsedPath html
plotting html
probability html
rescale html
robust-statistics html
segs html
snpArrayAssays html
snp_exp html
sourcePaths html
start-oligoSnpSet-method html
state-methods html
sweepMode html
threshold html
updateHmmParams html
viewports html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'VanillaICE' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rinit.c -o rinit.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c viterbi.c -o viterbi.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'VanillaICE' as VanillaICE_1.48.0.zip
* DONE (VanillaICE)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'VanillaICE' successfully unpacked and MD5 sums checked