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BUILD BIN report for PANR on tokay1

This page was generated on 2020-04-15 12:20:10 -0400 (Wed, 15 Apr 2020).

Package 1216/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PANR 1.32.0
Xin Wang
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/PANR
Branch: RELEASE_3_10
Last Commit: f28599d
Last Changed Date: 2019-10-29 13:08:22 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS [ OK ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PANR
Version: 1.32.0
Command: rm -rf PANR.buildbin-libdir && mkdir PANR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PANR.buildbin-libdir PANR_1.32.0.tar.gz
StartedAt: 2020-04-15 09:20:14 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 09:20:42 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 28.4 seconds
RetCode: 0
Status:  OK  
PackageFile: PANR_1.32.0.zip
PackageFileSize: 2.014 MiB

Command output

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###
### Running command:
###
###   rm -rf PANR.buildbin-libdir && mkdir PANR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PANR.buildbin-libdir PANR_1.32.0.tar.gz
###
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install for i386

* installing *source* package 'PANR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PANR'
    finding HTML links ... done
    BetaMixture-class                       html  
    PAN-class                               html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/PAN-class.Rd:21: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/PAN-class.Rd:85: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/PAN-class.Rd:85: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/PAN-class.Rd:89: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/PAN-class.Rd:89: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
    SNR2p                                   html  
    assoScore                               html  
    buildPAN                                html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/buildPAN.Rd:9: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/buildPAN.Rd:9: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/buildPAN.Rd:40: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/buildPAN.Rd:44: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
    cosineSim                               html  
    data-Bakal2007                          html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/data-Bakal2007.Rd:29: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
    edgeWeight                              html  
    exportPAN                               html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/exportPAN.Rd:8: file link 'write.graph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/exportPAN.Rd:8: file link 'igraph' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/exportPAN.Rd:31: file link 'write.graph' in package 'igraph' does not exist and so has been treated as a topic
    fitBM                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/fitBM.Rd:40: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
    fitNULL                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/fitNULL.Rd:25: file link 'dbeta' in package 'stats' does not exist and so has been treated as a topic
    infer                                   html  
    p2SNR                                   html  
    permNULL                                html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/permNULL.Rd:28: file link 'BetaMixture' in package 'PANR' does not exist and so has been treated as a topic
    pvclustModule                           html  
    sigModules                              html  
    summarize                               html  
    view                                    html  
    viewLegend                              html  
    viewNestedModules                       html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/viewNestedModules.Rd:9: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/viewNestedModules.Rd:38: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
    viewPAN                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/viewPAN.Rd:10: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/viewPAN.Rd:28: file link 'layout' in package 'igraph' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/viewPAN.Rd:42: file link 'RedeR' in package 'RedeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp8Wyc9T/R.INSTALL299c580240f0/PANR/man/viewPAN.Rd:60: file link 'layout' in package 'igraph' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'PANR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PANR' as PANR_1.32.0.zip
* DONE (PANR)