Ariane L. Moore
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/GeneAccord |
| Branch: RELEASE_3_10 |
| Last Commit: ad6ab9d |
| Last Changed Date: 2019-10-29 13:11:18 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:30:55 -0400 (Wed, 15 Apr 2020).
| Package 646/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| GeneAccord 1.4.0 Ariane L. Moore
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: GeneAccord |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GeneAccord_1.4.0.tar.gz && rm -rf GeneAccord.buildbin-libdir && mkdir GeneAccord.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAccord.buildbin-libdir GeneAccord_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GeneAccord_1.4.0.zip && rm GeneAccord_1.4.0.tar.gz GeneAccord_1.4.0.zip |
| StartedAt: 2020-04-14 20:38:44 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:40:03 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 79.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/GeneAccord_1.4.0.tar.gz && rm -rf GeneAccord.buildbin-libdir && mkdir GeneAccord.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAccord.buildbin-libdir GeneAccord_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL GeneAccord_1.4.0.zip && rm GeneAccord_1.4.0.tar.gz GeneAccord_1.4.0.zip
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install for i386
* installing *source* package 'GeneAccord' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GeneAccord'
finding HTML links ... done
GeneAccord html
all_genes_tbl html
avg_rates_m html
build_null_test_statistic html
clone_tbl_all_pats_all_trees html
compute_rates_clon_excl html
compute_test_stat_avg_rate html
convert_ensembl_to_reactome_pw_tbl html
create_ensembl_gene_tbl_hg html
create_tbl_ent_clones html
create_tbl_tree_collection html
ecdf_list html
ecdf_lr_test_clon_excl_avg_rate html
ensembl_to_hgnc html
ensembl_to_reactome html
ensg_reactome_path_map html
ensmusg_reactome_path_map html
extract_num_clones_tbl html
generate_ecdf_test_stat html
generate_test_stat_hist html
get_hist_clon_excl html
get_hist_clon_excl_this_pat_this_pair html
get_rate_diff_branch_ent_pair html
heatmap_clones_gene_pat html
hgnc_to_ensembl html
is_diff_branch_ent_pair html
list_of_clon_excl_all_pats html
list_of_num_trees_all_pats html
map_pairs_to_hgnc_symbols html
merge_clones_identical_ents html
pairs_in_patients_hist html
plot_ecdf_test_stat html
plot_rates_clon_excl html
take_pairs_and_get_patients html
vis_pval_distr_num_pat html
write_res_pairs_to_disk html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GeneAccord' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneAccord' as GeneAccord_1.4.0.zip
* DONE (GeneAccord)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'GeneAccord' successfully unpacked and MD5 sums checked