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BUILD report for BiocOncoTK on tokay1

This page was generated on 2020-04-15 12:30:28 -0400 (Wed, 15 Apr 2020).

Package 154/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocOncoTK 1.6.0
VJ Carey
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/BiocOncoTK
Branch: RELEASE_3_10
Last Commit: ca628a5
Last Changed Date: 2019-10-29 13:11:10 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocOncoTK
Version: 1.6.0
Command: chmod a+r BiocOncoTK -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
StartedAt: 2020-04-15 00:06:21 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 00:07:41 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 80.3 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r BiocOncoTK -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BiocOncoTK
###
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* checking for file 'BiocOncoTK/DESCRIPTION' ... OK
* preparing 'BiocOncoTK':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'BiocOncoTK.Rmd' using rmarkdown
Loading required package: ontologyIndex
Quitting from lines 690-695 (BiocOncoTK.Rmd) 
Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building 'BiocOncoTK.Rmd'

--- re-building 'curatedMSIData.Rmd' using rmarkdown
--- finished re-building 'curatedMSIData.Rmd'

--- re-building 'maptcga.Rmd' using rmarkdown
--- finished re-building 'maptcga.Rmd'

SUMMARY: processing the following file failed:
  'BiocOncoTK.Rmd'

Error: Vignette re-building failed.
Execution halted