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BioC 3.0: BUILD report for RCytoscape on oaxaca

This page was generated on 2015-04-10 10:04:20 -0700 (Fri, 10 Apr 2015).

Package 728/933HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RCytoscape 1.16.0
Paul Shannon
Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/RCytoscape
Last Changed Rev: 95439 / Revision: 102249
Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  ERROR  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  skipped  skipped 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  ERROR  skipped  skipped 
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: RCytoscape
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCytoscape
StartedAt: 2015-04-09 18:34:50 -0700 (Thu, 09 Apr 2015)
EndedAt: 2015-04-09 18:35:11 -0700 (Thu, 09 Apr 2015)
EllapsedTime: 21.6 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCytoscape
###
##############################################################################
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* checking for file ‘RCytoscape/DESCRIPTION’ ... OK
* preparing ‘RCytoscape’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: graph
Loading required package: XMLRPC
Note: the specification for S3 class “AsIs” in package ‘XMLRPC’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.

Error: processing vignette 'RCytoscape.Rnw' failed with diagnostics:
 chunk 1 (label = g0) 
Error in function (type, msg, asError = TRUE)  : 
  Failed connect to taipan:9023; Connection refused
Execution halted