Package: RCytoscape

Version: 1.3.2

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch RCytoscape_1.3.2.tar.gz

StartedAt: 2011-06-28 07:55:33 -0700 (Tue, 28 Jun 2011)

EndedAt: 2011-06-28 07:56:35 -0700 (Tue, 28 Jun 2011)

EllapsedTime: 61.8 seconds

RetCode: 1

Status:  ERROR

CheckDir: RCytoscape.Rcheck

Warnings: NA

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/RCytoscape.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RCytoscape/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RCytoscape' version '1.3.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RCytoscape' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... ERROR
Running examples in 'RCytoscape-Ex.R' failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CytoscapeConnection
> ### Title: CytoscapeConnection
> ### Aliases: CytoscapeConnection
> ### Keywords: graph
> 
> ### ** Examples
> 
>   cy <- CytoscapeConnection ()
>   deleteAllWindows (cy)
Error in postForm(url, .opts = .defaultOpts, style = "POST", curl = .curl) : 
  couldn't connect to host
Calls: deleteAllWindows ... getWindowCount -> getWindowCount -> xml.rpc -> postForm -> .Call
Execution halted

* installing *source* package 'RCytoscape' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RCytoscape.Rnw' 
** testing if installed package can be loaded

* DONE (RCytoscape)

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