| Back to the "Multiple platform build/check report" | A B C D E F G H I J K L M N O P Q [R] S T U V W X Y Z |
| Package 339/436 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| RCytoscape 1.1.46 Paul Shannon
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | [ WARNINGS ] | |||||
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK | |||||
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | OK | |||||
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK | |||||
| petty | Mac OS X Snow Leopard (10.6.4) / i386 | OK | WARNINGS | OK |
| Package: RCytoscape |
| Version: 1.1.46 |
| Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings RCytoscape_1.1.46.tar.gz |
| StartedAt: 2011-02-24 22:08:31 -0800 (Thu, 24 Feb 2011) |
| EndedAt: 2011-02-24 22:22:48 -0800 (Thu, 24 Feb 2011) |
| EllapsedTime: 856.5 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: RCytoscape.Rcheck |
| Warnings: 1 |
* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/RCytoscape.Rcheck’ * using R version 2.13.0 Under development (unstable) (2011-01-10 r53950) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RCytoscape/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RCytoscape’ version ‘1.1.46’ * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package ‘RCytoscape’ can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... WARNING Subdirectory 'data' contains no data sets. * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking data for non-ASCII characters ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... Running ‘RCytoscape_unit_tests.R’ OK * checking package vignettes in ‘inst/doc’ ... SKIPPED * checking PDF version of manual ... OK WARNING: There was 1 warning, see ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/RCytoscape.Rcheck/00check.log’ for details
RCytoscape.Rcheck/00install.out:
* installing *source* package ‘RCytoscape’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (RCytoscape)
RCytoscape.Rcheck/RCytoscape-Ex.timings:
| name | user | system | elapsed | |
| CytoscapeConnection | 0.136 | 0.000 | 0.181 | |
| CytoscapeConnectionClass-class | 0.000 | 0.000 | 0.001 | |
| CytoscapeWindow | 0.048 | 0.004 | 0.074 | |
| CytoscapeWindowClass-class | 0.084 | 0.000 | 0.119 | |
| addCyEdge | 0.376 | 0.008 | 3.639 | |
| addCyNode | 0.264 | 0.000 | 4.512 | |
| addGraphToGraph | 0.384 | 0.012 | 4.973 | |
| clearMsg | 0.008 | 0.000 | 0.012 | |
| clearSelection | 0.260 | 0.016 | 4.322 | |
| copyVisualStyle | 0.304 | 0.016 | 5.052 | |
| cy.sfn | 0.332 | 0.012 | 3.609 | |
| cy2.edge.names | 0.020 | 0.000 | 0.017 | |
| deleteEdgeAttribute | 0.276 | 0.008 | 4.561 | |
| deleteNodeAttribute | 0.288 | 0.000 | 4.591 | |
| destroyAllWindows | 0.144 | 0.012 | 0.341 | |
| destroyWindow | 0.072 | 0.000 | 0.108 | |
| displayGraph | 0.244 | 0.004 | 3.532 | |
| dockPanel | 0.024 | 0.000 | 0.025 | |
| eda | 0.016 | 0.000 | 0.017 | |
| eda.names | 0.020 | 0.000 | 0.018 | |
| existing.CytoscapeWindow | 0.872 | 0.020 | 3.999 | |
| firstNeighbors | 0.068 | 0.000 | 0.089 | |
| floatPanel | 0.024 | 0.000 | 0.059 | |
| getAllEdgeAttributes | 0.248 | 0.008 | 3.503 | |
| getAllEdges | 0.068 | 0.000 | 0.102 | |
| getAllNodeAttributes | 0.260 | 0.012 | 4.552 | |
| getAllNodes | 0.080 | 0.000 | 0.101 | |
| getArrowShapes | 0.012 | 0.000 | 0.013 | |
| getAttributeClassNames | 0 | 0 | 0 | |
| getDefaultBackgroundColor | 0.012 | 0.000 | 0.014 | |
| getDefaultEdgeReverseSelectionColor | 0.008 | 0.000 | 0.010 | |
| getDefaultEdgeSelectionColor | 0.012 | 0.000 | 0.010 | |
| getDefaultNodeReverseSelectionColor | 0.008 | 0.000 | 0.011 | |
| getDefaultNodeSelectionColor | 0.008 | 0.000 | 0.011 | |
| getDirectlyModifiableVisualProperties | 0.016 | 0.000 | 0.018 | |
| getEdgeAttribute | 0.288 | 0.004 | 4.527 | |
| getEdgeAttributeNames | 0.012 | 0.000 | 0.011 | |
| getEdgeCount | 0.288 | 0.004 | 4.564 | |
| getGraph | 0.080 | 0.000 | 0.111 | |
| getGraphFromCyWindow | 0.944 | 0.020 | 4.257 | |
| getLayoutNames | 0.012 | 0.000 | 0.014 | |
| getLineStyles | 0.012 | 0.000 | 0.013 | |
| getNodeAttribute | 0.292 | 0.008 | 3.623 | |
| getNodeAttributeNames | 0.012 | 0.000 | 0.012 | |
| getNodeCount | 0.288 | 0.008 | 4.531 | |
| getNodeShapes | 0.012 | 0.004 | 0.014 | |
| getPosition | 0.296 | 0.004 | 4.551 | |
| getSelectedEdgeCount | 0.356 | 0.004 | 3.645 | |
| getSelectedEdges | 0.344 | 0.020 | 3.639 | |
| getSelectedNodeCount | 0.312 | 0.000 | 4.578 | |
| getSelectedNodes | 0.408 | 0.012 | 4.649 | |
| getVisualStyleNames | 0.012 | 0.000 | 0.012 | |
| getWindowCount | 0.212 | 0.004 | 0.270 | |
| getWindowID | 0.332 | 0.008 | 5.378 | |
| getWindowList | 0.076 | 0.004 | 0.077 | |
| hideAllPanels | 0.228 | 0.008 | 0.376 | |
| hideNodes | 0.168 | 0.000 | 0.399 | |
| hidePanel | 0.024 | 0.000 | 0.027 | |
| hideSelectedEdges | 0.184 | 0.000 | 0.515 | |
| hideSelectedNodes | 0.188 | 0.004 | 0.444 | |
| initEdgeAttribute | 0.004 | 0.000 | 0.002 | |
| initNodeAttribute | 0.004 | 0.000 | 0.002 | |
| invertEdgeSelection | 0.144 | 0.004 | 0.180 | |
| invertNodeSelection | 0.156 | 0.004 | 0.217 | |
| layout | 0.332 | 0.024 | 3.682 | |
| lockNodeDimensions | 0.336 | 0.020 | 5.669 | |
| makeRandomGraph | 0.020 | 0.000 | 0.019 | |
| makeSimpleGraph | 0.020 | 0.000 | 0.022 | |
| msg | 0.012 | 0.000 | 0.011 | |
| new.CytoscapeWindow | 0.120 | 0.000 | 0.176 | |
| noa | 0.016 | 0.000 | 0.015 | |
| noa.names | 0.012 | 0.004 | 0.016 | |
| ping | 0.008 | 0.004 | 0.012 | |
| raiseWindow | 0.136 | 0.000 | 0.167 | |
| redraw | 0.140 | 0.000 | 0.166 | |
| removeSelectedEdges | 0.176 | 0.000 | 0.211 | |
| removeSelectedNodes | 0.176 | 0.004 | 0.204 | |
| resizeWindow | 0.332 | 0.004 | 3.632 | |
| saveImage | 0.332 | 0.000 | 4.221 | |
| selectEdge | 0.364 | 0.004 | 4.646 | |
| selectEdges | 0.372 | 0.016 | 3.661 | |
| selectNodes | 0.192 | 0.004 | 0.444 | |
| sendEdgeAttributes | 0.216 | 0.000 | 2.233 | |
| sendEdgeAttributesDirect | 0.172 | 0.004 | 1.190 | |
| sendEdges | 0.180 | 0.000 | 1.224 | |
| sendNodeAttributes | 0.228 | 0.000 | 0.285 | |
| sendNodeAttributesDirect | 0.184 | 0.000 | 0.203 | |
| sendNodes | 0.177 | 0.000 | 0.205 | |
| setDefaultBackgroundColor | 0.008 | 0.004 | 0.011 | |
| setDefaultEdgeColor | 0.380 | 0.008 | 3.701 | |
| setDefaultEdgeLineWidth | 0.392 | 0.000 | 4.620 | |
| setDefaultEdgeReverseSelectionColor | 0.016 | 0.000 | 0.014 | |
| setDefaultEdgeSelectionColor | 0.012 | 0.000 | 0.012 | |
| setDefaultNodeBorderColor | 0.384 | 0.004 | 3.620 | |
| setDefaultNodeBorderWidth | 0.364 | 0.004 | 3.680 | |
| setDefaultNodeColor | 0.404 | 0.004 | 3.647 | |
| setDefaultNodeFontSize | 0.428 | 0.008 | 3.679 | |
| setDefaultNodeLabelColor | 0.408 | 0.000 | 5.660 | |
| setDefaultNodeReverseSelectionColor | 0.012 | 0.000 | 0.012 | |
| setDefaultNodeSelectionColor | 0.008 | 0.004 | 0.013 | |
| setDefaultNodeShape | 0.420 | 0.000 | 4.739 | |
| setDefaultNodeSize | 0.488 | 0.016 | 3.742 | |
| setEdgeColorRule | 0.300 | 0.008 | 4.584 | |
| setEdgeLabelRule | 0.40 | 0.00 | 3.66 | |
| setEdgeLineStyleRule | 0.212 | 0.004 | 1.316 | |
| setEdgeLineWidthRule | 0.400 | 0.016 | 6.663 | |
| setEdgeSourceArrowColorRule | 0.236 | 0.000 | 1.257 | |
| setEdgeSourceArrowRule | 0.236 | 0.000 | 1.270 | |
| setEdgeTargetArrowColorRule | 0.232 | 0.000 | 1.254 | |
| setEdgeTargetArrowRule | 0.240 | 0.000 | 2.266 | |
| setEdgeTooltipRule | 0.408 | 0.004 | 5.783 | |
| setGraph | 0.220 | 0.000 | 0.237 | |
| setNodeBorderColorRule | 0.280 | 0.000 | 3.309 | |
| setNodeBorderOpacityDirect | 0.412 | 0.012 | 4.694 | |
| setNodeBorderWidthRule | 0.436 | 0.000 | 6.677 | |
| setNodeColorDirect | 0.428 | 0.004 | 3.688 | |
| setNodeColorRule | 0.276 | 0.004 | 2.319 | |
| setNodeFillOpacityDirect | 0.424 | 0.004 | 4.007 | |
| setNodeHeightDirect | 0.512 | 0.012 | 3.797 | |
| setNodeLabelOpacityDirect | 0.448 | 0.000 | 4.688 | |
| setNodeLabelRule | 0.564 | 0.008 | 3.904 | |
| setNodeOpacityDirect | 0.452 | 0.004 | 5.719 | |
| setNodeShapeDirect | 0.452 | 0.000 | 4.707 | |
| setNodeShapeRule | 0.292 | 0.004 | 1.319 | |
| setNodeSizeDirect | 0.436 | 0.012 | 4.708 | |
| setNodeSizeRule | 0.500 | 0.012 | 6.848 | |
| setNodeTooltipRule | 0.520 | 0.008 | 7.786 | |
| setNodeWidthDirect | 0.608 | 0.004 | 4.866 | |
| setPosition | 0.508 | 0.000 | 4.778 | |
| setVisualStyle | 0.564 | 0.012 | 5.591 | |
| unhideAll | 0.488 | 0.008 | 3.848 | |
| unhideNodes | 0.476 | 0.036 | 1.595 | |
| version | 0.016 | 0.000 | 0.015 | |