Package: GGtools

Version: 3.6.1

Command: chmod a+r GGtools -R && D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build GGtools

StartedAt: 2010-10-04 13:59:33 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 14:00:37 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 63.8 seconds

RetCode: 0

Status:  OK

PackageFile: GGtools_3.6.1.tar.gz

PackageFileSize: 43.48 MiB

* checking for file 'GGtools/DESCRIPTION' ... OK
* preparing 'GGtools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package 'GGtools' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GSEABase
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: graph
Loading required package: snpMatrix
Loading required package: survival
Loading required package: splines
Loading required package: RSQLite
Loading required package: DBI
Loading required package: tools
Loading required package: bit
Loading package bit1.1-6

package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)

creators: bit bitwhich

coercion: as.logical as.integer as.bit as.bitwhich which

operator: ! & | xor != == 

querying: print length any all min max range sum summary

bit access: length<- [ [<- [[ [[<-

for more help type ?bit


Attaching package: 'bit'

The following object(s) are masked from 'package:base':

    xor

Loading package ff2.2-0

- getOption("fftempdir")=="D:/biocbld/bbs-2.6-bioc/tmpdir/RtmpS52czb"

- getOption("ffextension")=="ff"

- getOption("ffdrop")==TRUE

- getOption("fffinonexit")==TRUE

- getOption("ffpagesize")==65536

- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes

- getOption("ffbatchbytes")==42928701.44 -- consider a different value for tuning your system

- getOption("ffmaxbytes")==2146435072 -- consider a different value for tuning your system

Attaching package ff


Attaching package: 'ff'

The following object(s) are masked from 'package:utils':

    write.csv, write.csv2

The following object(s) are masked from 'package:base':

    is.factor, is.ordered


Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

Loading required package: RCurl
Loading required package: bitops
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GGtools)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'GGtools_3.6.1.tar.gz'