lmdme 1.1.5
Cristobal Fresno
| Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/lmdme | | Last Changed Rev: 74688 / Revision: 74774 | | Last Changed Date: 2013-03-22 10:51:53 -0700 (Fri, 22 Mar 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/lmdme.Rcheck'
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'lmdme/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'lmdme' version '1.1.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'lmdme' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
permutation,formula-data.frame-data.frame: no visible binding for
global variable 'mclapply'
permutation,formula-data.frame-data.frame: no visible global function
definition for 'detectCores'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [88s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
lmdme-permutation 19.14 0.83 19.97
lmdme-biplot 8.65 0.42 9.14
lmdme-decomposition 7.86 0.39 8.25
lmdme-padjust 7.52 0.09 7.62
lmdme-printshow 7.16 0.22 7.38
lmdme-lmdme 7.13 0.03 7.16
lmdme-loadingplot 6.97 0.11 7.08
lmdme-leverage 6.52 0.13 6.65
lmdme-screeplot 6.30 0.15 6.46
lmdme-getters 6.24 0.20 6.44
** running examples for arch 'x64' ... [94s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
lmdme-permutation 20.15 1.16 21.31
lmdme-biplot 9.58 0.45 10.03
lmdme-decomposition 8.86 0.41 9.27
lmdme-lmdme 8.50 0.39 8.89
lmdme-padjust 8.16 0.37 8.53
lmdme-leverage 7.39 0.37 7.77
lmdme-loadingplot 7.01 0.35 7.35
lmdme-screeplot 6.60 0.37 7.01
lmdme-getters 6.71 0.23 6.95
lmdme-printshow 5.82 0.39 6.21
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'E:/biocbld/bbs-2.12-bioc/meat/lmdme.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'lmdme' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'fitted.values' from package 'stats' in package 'lmdme'
Creating a generic function for 'fitted' from package 'stats' in package 'lmdme'
Creating a generic function for 'coef' from package 'stats' in package 'lmdme'
Creating a generic function for 'coefficients' from package 'stats' in package 'lmdme'
Creating a generic function for 'resid' from package 'stats' in package 'lmdme'
Creating a generic function for 'residuals' from package 'stats' in package 'lmdme'
Creating a generic function for 'print' from package 'base' in package 'lmdme'
Creating a generic function for 'summary' from package 'base' in package 'lmdme'
Creating a new generic function for 'p.adjust' in package 'lmdme'
Creating a generic function for 'biplot' from package 'stats' in package 'lmdme'
Creating a generic function for 'screeplot' from package 'stats' in package 'lmdme'
Creating a generic function for 'loadingplot' from package 'pls' in package 'lmdme'
** help
*** installing help indices
** building package indices
** installing vignettes
'lmdme-vignette.Rnw' using 'latin1'
** testing if installed package can be loaded
install for x64
* installing *source* package 'lmdme' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'lmdme' as lmdme_1.1.5.zip
* DONE (lmdme)