flowClust 2.99.40
Raphael Gottardo
| Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowClust | | Last Changed Rev: 73670 / Revision: 74774 | | Last Changed Date: 2013-02-21 10:24:23 -0800 (Thu, 21 Feb 2013) |
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | WARNINGS | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | [ OK ] |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
install for i386
* installing *source* package 'flowClust' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c BoxCox.c -o BoxCox.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c BoxCoxPriors.c -o BoxCoxPriors.o
BoxCoxPriors.c: In function 'BoxCoxGradientPriors':
BoxCoxPriors.c:57:16: warning: unused variable 'rowZ' [-Wunused-variable]
BoxCoxPriors.c:33:24: warning: unused variable 'kappa0' [-Wunused-variable]
BoxCoxPriors.c:32:7: warning: unused variable 'itersolve' [-Wunused-variable]
BoxCoxPriors.c:31:6: warning: unused variable 'iter' [-Wunused-variable]
BoxCoxPriors.c:28:6: warning: unused variable 'model' [-Wunused-variable]
BoxCoxPriors.c:23:14: warning: unused variable 'SumZlogY' [-Wunused-variable]
BoxCoxPriors.c:15:14: warning: unused variable 'Precision' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Nu.c -o Nu.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c flowClust.c -o flowClust.o
flowClust.c: In function 'flowClust':
flowClust.c:48:2: warning: unused variable 'matrixZUY2' [-Wunused-variable]
flowClust.c:46:48: warning: unused variable 'subRowZUY2' [-Wunused-variable]
flowClust.c:46:39: warning: unused variable 'rowZUY2' [-Wunused-variable]
flowClust.c: In function 'ECMUpdateSigmaG2':
flowClust.c:1111:6: warning: unused variable 'i' [-Wunused-variable]
flowClust.c: In function 'ECMUpdateMUg':
flowClust.c:1199:1: warning: control reaches end of non-void function [-Wreturn-type]
flowClust.c: In function 'flowClust':
flowClust.c:702:11: warning: 's3' may be used uninitialized in this function [-Wuninitialized]
flowClust.c:647:13: warning: 's2' may be used uninitialized in this function [-Wuninitialized]
flowClust.c:348:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function 'flowClustGaussian':
flowClustGaussian.c:207:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ranMVNT.c -o ranMVNT.o
gcc -m32 -shared -s -static-libgcc -o flowClust.dll tmp.def BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/flowClust.buildbin-libdir/flowClust/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'plot' when loading 'graphics'
** help
*** installing help indices
** building package indices
** installing vignettes
'flowClust.Rnw'
** testing if installed package can be loaded
Warning: replacing previous import 'plot' when loading 'graphics'
install for x64
* installing *source* package 'flowClust' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c BoxCox.c -o BoxCox.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c BoxCoxPriors.c -o BoxCoxPriors.o
BoxCoxPriors.c: In function 'BoxCoxGradientPriors':
BoxCoxPriors.c:57:16: warning: unused variable 'rowZ' [-Wunused-variable]
BoxCoxPriors.c:33:24: warning: unused variable 'kappa0' [-Wunused-variable]
BoxCoxPriors.c:32:7: warning: unused variable 'itersolve' [-Wunused-variable]
BoxCoxPriors.c:31:6: warning: unused variable 'iter' [-Wunused-variable]
BoxCoxPriors.c:28:6: warning: unused variable 'model' [-Wunused-variable]
BoxCoxPriors.c:23:14: warning: unused variable 'SumZlogY' [-Wunused-variable]
BoxCoxPriors.c:15:14: warning: unused variable 'Precision' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Nu.c -o Nu.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c flowClust.c -o flowClust.o
flowClust.c: In function 'flowClust':
flowClust.c:48:2: warning: unused variable 'matrixZUY2' [-Wunused-variable]
flowClust.c:46:48: warning: unused variable 'subRowZUY2' [-Wunused-variable]
flowClust.c:46:39: warning: unused variable 'rowZUY2' [-Wunused-variable]
flowClust.c: In function 'ECMUpdateSigmaG2':
flowClust.c:1111:6: warning: unused variable 'i' [-Wunused-variable]
flowClust.c: In function 'ECMUpdateMUg':
flowClust.c:1199:1: warning: control reaches end of non-void function [-Wreturn-type]
flowClust.c: In function 'flowClust':
flowClust.c:702:11: warning: 's3' may be used uninitialized in this function [-Wuninitialized]
flowClust.c:647:13: warning: 's2' may be used uninitialized in this function [-Wuninitialized]
flowClust.c:348:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function 'flowClustGaussian':
flowClustGaussian.c:207:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.12-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ranMVNT.c -o ranMVNT.o
gcc -m64 -shared -s -static-libgcc -o flowClust.dll tmp.def BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -LC:/GSL/x64/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.12-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.12-bioc/meat/flowClust.buildbin-libdir/flowClust/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'plot' when loading 'graphics'
* MD5 sums
packaged installation of 'flowClust' as flowClust_2.99.40.zip
* DONE (flowClust)