| Back to the "Multiple platform build/check report" | A B C D E F G H I J K L M N O P Q [R] S T U V W X Y Z |
| Package 526/658 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
| RedeR 1.6.2 Mauro Castro
| george2 | Linux (Ubuntu 12.04.1 LTS) / x86_64 | OK | [ OK ] | |||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | |||||
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| Package: RedeR |
| Version: 1.6.2 |
| Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings RedeR_1.6.2.tar.gz |
| StartedAt: 2013-03-25 04:09:54 -0700 (Mon, 25 Mar 2013) |
| EndedAt: 2013-03-25 04:11:36 -0700 (Mon, 25 Mar 2013) |
| EllapsedTime: 102.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RedeR.Rcheck |
| Warnings: 0 |
* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/RedeR.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.6.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... [9s/10s] OK
* checking installed package size ... NOTE
installed size is 9.2Mb
sub-directories of 1Mb or more:
data 3.2Mb
java 4.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
LICENCE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [9s/10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/home/biocbuild/bbs-2.12-bioc/meat/RedeR.Rcheck/00check.log’
for details.
RedeR.Rcheck/00install.out:
* installing *source* package ‘RedeR’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘RedeR.Rnw’ ** testing if installed package can be loaded * DONE (RedeR)
RedeR.Rcheck/RedeR-Ex.timings:
| name | user | system | elapsed | |
| PluginBuilder-class | 0.036 | 0.000 | 0.034 | |
| PluginBuilder | 0.028 | 0.000 | 0.027 | |
| RedPort-class | 0.016 | 0.000 | 0.015 | |
| RedPort | 0.012 | 0.000 | 0.014 | |
| RedeR.data | 1.112 | 0.040 | 1.158 | |
| addEdgeBetweenContainers | 0.012 | 0.008 | 0.022 | |
| addEdges | 0.016 | 0.000 | 0.016 | |
| addGraph | 0.040 | 0.000 | 0.041 | |
| addLegend | 0.024 | 0.000 | 0.027 | |
| addNodes | 0.016 | 0.000 | 0.018 | |
| addSeries | 0.012 | 0.008 | 0.020 | |
| addSubgraph | 0.024 | 0.000 | 0.025 | |
| addSubgraph.list | 0.016 | 0.000 | 0.018 | |
| att | 0.100 | 0.004 | 0.107 | |
| calld | 0.012 | 0.004 | 0.014 | |
| cea | 1.956 | 0.040 | 2.002 | |
| deSelectEdges | 0.024 | 0.000 | 0.025 | |
| deSelectGraph | 0.024 | 0.004 | 0.026 | |
| deSelectNodes | 0.044 | 0.000 | 0.044 | |
| deleteEdges | 0.032 | 0.000 | 0.032 | |
| deleteNodes | 0.040 | 0.000 | 0.042 | |
| deletePlugin | 0.012 | 0.000 | 0.015 | |
| deleteSelectedEdges | 0.016 | 0.000 | 0.016 | |
| deleteSelectedNodes | 0.012 | 0.000 | 0.014 | |
| duplicateGraph | 0.016 | 0.000 | 0.014 | |
| dynwin | 0.008 | 0.000 | 0.009 | |
| exitd | 0.012 | 0.000 | 0.011 | |
| getArrowDirection | 0.016 | 0.000 | 0.017 | |
| getContainerComponets | 0.020 | 0.000 | 0.017 | |
| getEdgeColor | 0.012 | 0.000 | 0.012 | |
| getEdgeIDs | 0.016 | 0.000 | 0.015 | |
| getEdgeType | 0.020 | 0.000 | 0.019 | |
| getEdgeWeight | 0.02 | 0.00 | 0.02 | |
| getEdgeWidth | 0.020 | 0.000 | 0.019 | |
| getEdges | 0.016 | 0.000 | 0.018 | |
| getGraph | 0.020 | 0.000 | 0.017 | |
| getNodeAliases | 0.160 | 0.004 | 0.167 | |
| getNodeBend | 0.016 | 0.004 | 0.017 | |
| getNodeColor | 0.016 | 0.000 | 0.016 | |
| getNodeFontColor | 0.008 | 0.004 | 0.013 | |
| getNodeFontName | 0.008 | 0.008 | 0.017 | |
| getNodeFontSize | 0.012 | 0.008 | 0.019 | |
| getNodeFontStyle | 0.012 | 0.004 | 0.020 | |
| getNodeFontX | 0.008 | 0.012 | 0.020 | |
| getNodeFontY | 0.016 | 0.004 | 0.019 | |
| getNodeH | 0.008 | 0.008 | 0.018 | |
| getNodeIDs | 0.008 | 0.012 | 0.039 | |
| getNodeLineColor | 0.004 | 0.012 | 0.020 | |
| getNodeLineWidth | 0.020 | 0.004 | 0.021 | |
| getNodeShape | 0.008 | 0.004 | 0.016 | |
| getNodeSize | 0.016 | 0.004 | 0.019 | |
| getNodeW | 0.012 | 0.008 | 0.020 | |
| getNodeWeight | 0.012 | 0.004 | 0.016 | |
| getNodeX | 0.012 | 0.004 | 0.017 | |
| getNodeY | 0.012 | 0.008 | 0.020 | |
| getNodes | 0.008 | 0.004 | 0.015 | |
| getSourceEdgeIDs | 0.02 | 0.00 | 0.02 | |
| getSourceEdges | 0.016 | 0.008 | 0.024 | |
| getTargetEdgeIDs | 0.008 | 0.004 | 0.013 | |
| getTargetEdges | 0.020 | 0.004 | 0.026 | |
| gtoy.rm | 0.000 | 0.008 | 0.009 | |
| isDynamicsActive | 0.012 | 0.000 | 0.015 | |
| mergeNodes | 0.008 | 0.004 | 0.013 | |
| mergeOutEdges | 0.008 | 0.012 | 0.018 | |
| nestNodes | 0.012 | 0.012 | 0.021 | |
| nesthc | 0.008 | 0.008 | 0.018 | |
| ping | 0.012 | 0.000 | 0.015 | |
| pluginParser | 0.004 | 0.004 | 0.009 | |
| relax | 0.012 | 0.008 | 0.020 | |
| resetd | 0.000 | 0.016 | 0.018 | |
| selectAllEdges | 0.020 | 0.012 | 0.038 | |
| selectAllNodes | 0.012 | 0.012 | 0.022 | |
| selectEdges | 0.012 | 0.016 | 0.027 | |
| selectGraph | 0.016 | 0.012 | 0.029 | |
| selectNodes | 0.008 | 0.008 | 0.017 | |
| setArrowDirection | 0.012 | 0.008 | 0.021 | |
| setEdgeColor | 0.020 | 0.000 | 0.019 | |
| setEdgeType | 0.008 | 0.008 | 0.017 | |
| setEdgeWeight | 0.016 | 0.008 | 0.025 | |
| setEdgeWidth | 0.024 | 0.004 | 0.031 | |
| setNodeAliases | 0.020 | 0.008 | 0.031 | |
| setNodeBend | 0.012 | 0.008 | 0.024 | |
| setNodeColor | 0.016 | 0.012 | 0.030 | |
| setNodeFontColor | 0.224 | 0.008 | 0.287 | |
| setNodeFontName | 0.008 | 0.008 | 0.019 | |
| setNodeFontSize | 0.008 | 0.008 | 0.023 | |
| setNodeFontStyle | 0.008 | 0.008 | 0.020 | |
| setNodeFontXY | 0.004 | 0.008 | 0.013 | |
| setNodeLineColor | 0.012 | 0.008 | 0.041 | |
| setNodeLineWidth | 0.020 | 0.000 | 0.019 | |
| setNodeShape | 0.012 | 0.004 | 0.017 | |
| setNodeSize | 0.008 | 0.008 | 0.017 | |
| setNodeWeight | 0.016 | 0.004 | 0.021 | |
| setNodeXY | 0.020 | 0.004 | 0.024 | |
| subg | 0.096 | 0.004 | 0.102 | |
| submitPlugin | 0.036 | 0.000 | 0.041 | |
| updateContainerSize | 0.020 | 0.000 | 0.023 | |
| updateGraph | 0.016 | 0.004 | 0.025 | |
| updatePlugins | 0.008 | 0.008 | 0.015 | |
| version | 0.008 | 0.008 | 0.020 | |