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Package 63/208OSArchBUILDCHECKBUILD BIN

gaggle

1.3.0

Paul Shannon		Linux (SUSE 9.2) x86_64 OK  WARNINGS 
Linux (SUSE 10.1) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 OK  WARNINGS 
Solaris 2.9 sparc OK [ ERROR ]
Windows Server 2003 x86_64 OK  WARNINGS  OK 
Windows Server 2003 NA OK  ERROR  OK 
Mac OS X (10.4.6) i686 OK  WARNINGS 
Package: gaggle
Version: 1.3.0
Command: /loc/biocbuild/2.0d/R/bin/R CMD check gaggle_1.3.0.tar.gz
RetCode: 1
Time: 23.7 seconds
Status: ERROR
CheckDir: gaggle.Rcheck
Warnings: NA

Command output

* checking for working latex ... OK
* using log directory '/loc/biocbuild/2.0d/Rpacks/gaggle.Rcheck'
* using R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
* checking for file 'gaggle/DESCRIPTION' ... OK
* this is package 'gaggle' version '1.3.0'
* checking package dependencies ... WARNING
'library' or 'require' calls not declared from:
  RUnit
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking if this is a source package ... OK
* checking whether package 'gaggle' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... ERROR
Loading required package: rJava
Loading required package: graph

onLoad -- libname: /loc/biocbuild/2.0d/Rpacks/gaggle.Rcheck pkgname: gaggle 
initializing gaggle package 1.1.8
path to jar: /loc/biocbuild/2.0d/Rpacks/gaggle.Rcheck/gaggle/jars/gaggleRShell.jar 
      script:  gaggle.R $Revision: 882 $   $Date: 2006-08-30 14:57:21 -0700 (Wed, 30 Aug 2006) $ 
Error occurred during initialization of VM
Signal chaining not allowed for VM interrupt signal, try -XX:+UseAltSigs.

It looks like this package has a loading problem: see the messages for
details.

gaggle.Rcheck/00install.out:

* Installing *source* package 'gaggle' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'gaggle'
     Formats: text html latex example 
  broadcast                         text    html    latex
  gaggleInit                        text    html    latex
  geese                             text    html    latex
  getCluster                        text    html    latex
  getHashMap                        text    html    latex
  getMatrix                         text    html    latex
  getNameList                       text    html    latex
  getNetwork                        text    html    latex
  getSpecies                        text    html    latex
  getTargetGoose                    text    html    latex
  hideGoose                         text    html    latex
  setSpecies                        text    html    latex
  setTargetGoose                    text    html    latex
  showGoose                         text    html    latex
  testGagglePackage                 text    html    latex
** building package indices ...
* DONE (gaggle)