Package: GLAD

Version: 1.6.0

Command: D:\biocbld\1.8d\R\bin\R.exe CMD check GLAD_1.6.0.tar.gz

RetCode: 0

Time: 78.4 seconds

Status: OK

CheckDir: GLAD.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/GLAD.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'GLAD/DESCRIPTION' ... OK
* this is package 'GLAD' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GLAD' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating GLAD-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating GLAD-manual.tex ... OK
* checking GLAD-manual.tex ... OK

installing R.css in D:/biocbld/1.8d/Rpacks/GLAD.Rcheck


---------- Making package GLAD ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making distance.d from distance.c
making glad-function.d from glad-function.c
making hclust.d from hclust.c
making laws.d from laws.c
making glad.d from glad.cpp
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c distance.c -o distance.o
distance.c: In function `R_correlation':
distance.c:175: warning: unused variable `dist'
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c glad-function.c -o glad-function.o
glad-function.c: In function `updateOutliers':
glad-function.c:118: warning: suggest parentheses around comparison in operand of &
glad-function.c: In function `updateOutliersMoveBkp':
glad-function.c:143: warning: suggest parentheses around comparison in operand of &
glad-function.c: In function `moveBkp':
glad-function.c:174: warning: suggest parentheses around comparison in operand of &
glad-function.c:174: warning: suggest parentheses around comparison in operand of &
glad-function.c:174: warning: suggest parentheses around comparison in operand of &
glad-function.c:185: warning: suggest parentheses around comparison in operand of &
glad-function.c:185: warning: suggest parentheses around comparison in operand of &
glad-function.c:185: warning: suggest parentheses around comparison in operand of &
glad-function.c:185: warning: suggest parentheses around comparison in operand of &
glad-function.c: In function `awsBkp':
glad-function.c:231: warning: suggest parentheses around comparison in operand of &
glad-function.c:231: warning: suggest parentheses around comparison in operand of &
glad-function.c:231: warning: suggest parentheses around comparison in operand of &
glad-function.c:259: warning: suggest parentheses around comparison in operand of &
glad-function.c:261: warning: suggest parentheses around comparison in operand of |
glad-function.c: In function `updateBkpRL':
glad-function.c:333: warning: suggest parentheses around comparison in operand of |
glad-function.c:367: warning: suggest parentheses around comparison in operand of &
glad-function.c:367: warning: suggest parentheses around comparison in operand of &
glad-function.c:377: warning: suggest parentheses around comparison in operand of &
glad-function.c: In function `updateGNL':
glad-function.c:543: warning: suggest parentheses around comparison in operand of |
glad-function.c:556: warning: suggest parentheses around comparison in operand of |
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c hclust.c -o hclust.o
hclust.c: In function `hclust':
hclust.c:56: warning: unused variable `tmp'
hclust.c:276: warning: control reaches end of non-void function
hclust.c:49: warning: 'im' might be used uninitialized in this function
hclust.c:49: warning: 'jm' might be used uninitialized in this function
hclust.c:49: warning: 'jj' might be used uninitialized in this function
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c laws.c -o laws.o
g++   -Id:/biocbld/1.8d/R/include -Wall -O2   -c glad.cpp -o glad.o
glad.cpp: In function `void detectOutliers(double*, int*, int*, int*, int*, int*, double*, int*)':
glad.cpp:106: warning: comparison between signed and unsigned integer expressions
windres --include-dir d:/biocbld/1.8d/R/include  -i GLAD_res.rc -o GLAD_res.o
g++  -shared -s  -o GLAD.dll GLAD.def distance.o glad-function.o hclust.o laws.o glad.o GLAD_res.o  -Ld:/biocbld/1.8d/R/bin   -lR
  ... DLL made
  installing DLL
  installing R files
  installing demos
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'GLAD'
     Formats: text html latex example chm 
  ChrNumeric                        text    html    latex   example chm
  ColorBar                          text    html    latex   example chm
  GLAD-internal                     text    html    latex           chm
  arrayCGH                          text    html    latex   example chm
  arrayPersp                        text    html    latex   example chm
  arrayPlot                         text    html    latex   example chm
  as.data.frame.profileCGH          text    html    latex   example chm
  as.profileCGH                     text    html    latex   example chm
  bladder                           text    html    latex   example chm
  cytoband                          text    html    latex   example chm
  daglad                            text    html    latex   example chm
  glad                              text    html    latex   example chm
  hclust                            text    html    latex   example chm
  kernel                            text    html    latex           chm
  myPalette                         text    html    latex   example chm
  plotProfile                       text    html    latex   example chm
  profileCGH                        text    html    latex   example chm
  snijders                          text    html    latex   example chm
  tkdaglad                          text    html    latex   example chm
  veltman                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\GLAD.Rcheck\00_pkg_src\GLAD\chm\GLAD.chm


Compile time: 0 minutes, 0 seconds
21	Topics
90	Local links
14	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\GLAD.Rcheck\00_pkg_src\GLAD\chm\GLAD.chm, 52,657 bytes
Compression decreased file by 54,583 bytes.
  preparing package GLAD for lazy loading
  adding MD5 sums

* DONE (GLAD)