Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/GXwasR
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 24.04.3 LTS)/x86_64   OK     OK     skipped     OK  

nebbiolo2 Summary

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Package: GXwasR
Version: 0.99.2
RVersion: 4.5
BiocVersion: 3.22
BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GXwasR
BuildTime: 3 minutes 35.01 seconds
CheckCommand: BiocCheckGitClone('GXwasR') && /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/3911/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/3911/GXwasR_20251103122417/GXwasR.install-out.txt GXwasR_0.99.2.tar.gz && BiocCheck('GXwasR_0.99.2.tar.gz', `new-package`=TRUE)
CheckTime: 8 minutes 3.44 seconds
BuildBinCommand:
BuildBinTime:
PackageFileSize: 3178.54 KiB
BuildID:: GXwasR_20251103122417
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: GXwasR. Starting Build package. Starting Check package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 0.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file GXwasR/DESCRIPTION ... OK
* preparing GXwasR:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: GXwasR
* saving partial Rd database
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a data/datalist file should be added
* building GXwasR_0.99.2.tar.gz

nebbiolo2 CHECK output

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===============================

 BiocCheckGitClone('GXwasR')

===============================

 sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3911/GXwasR_20251103122417/GXwasR
 BiocVersion: 3.22
 Package: GXwasR
 PackageVersion: 0.99.2
 BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3911/GXwasR_20251103122417/GXwasR.BiocCheck
 BiocCheckVersion: 1.47.0
 sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3911/GXwasR_20251103122417/GXwasR
 installDir: NULL
 isTarBall: FALSE
 platform: unix
* Checking valid files...
* Checking individual file sizes...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking if DESCRIPTION is well formatted...
* Checking NAMESPACE...
* Checking for valid maintainer...
* Checking CITATION...
* Checking that provided CITATION file is correctly formatted...
 BiocCheck v1.47.0 results 
 0 ERRORS |  0 WARNINGS | i 0 NOTES
i For more details, run
  browseVignettes(package = 'BiocCheck')




===============================

 R CMD CHECK

===============================

* using log directory /home/pkgbuild/packagebuilder/workers/jobs/3911/GXwasR_20251103122417/GXwasR.Rcheck
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using option --no-vignettes
* checking for file GXwasR/DESCRIPTION ... OK
* this is package GXwasR version 0.99.2
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 31 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package GXwasR can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking build directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [11s/11s] OK
* checking whether the package can be loaded with stated dependencies ... [11s/11s] OK
* checking whether the package can be unloaded cleanly ... [11s/11s] OK
* checking whether the namespace can be loaded with stated dependencies ... [11s/11s] OK
* checking whether the namespace can be unloaded cleanly ... [12s/12s] OK
* checking loading without being on the library search path ... [12s/12s] OK
* checking whether startup messages can be suppressed ... [12s/12s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [51s/51s] OK
* checking Rd files ... [12s/12s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of data directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in vignettes ... OK
* checking examples ... [148s/146s] OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
TestXGene      10.523 10.026  19.256
PvalComb       12.705  0.337  13.045
GXwas           8.911  0.561   9.254
GeneticCorrBT   5.178  2.747   9.050
SumstatGenCorr  7.444  0.110   7.555
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running spelling.R [0s/0s]
  Running testthat.R [18s/18s]
 [18s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [4s/4s] OK
* DONE

Status: OK





===============================

 BiocCheck('GXwasR_0.99.2.tar.gz')

===============================

 Installing GXwasR 
 Package installed successfully
 GXwasR session metadata 
 sourceDir: /tmp/RtmpRUy96y/file70f626205301b/GXwasR
 BiocVersion: 3.22
 Package: GXwasR
 PackageVersion: 0.99.2
 BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3911/GXwasR_20251103122417/GXwasR.BiocCheck
 BiocCheckVersion: 1.47.0
 sourceDir: /tmp/RtmpRUy96y/file70f626205301b/GXwasR
 installDir: /tmp/RtmpRUy96y/file70f622ba75778
 isTarBall: TRUE
 platform: unix
 Running BiocCheck on GXwasR 
* Checking for deprecated package usage...


* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
 Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
i Bioconductor dependencies found in Imports & Depends (24%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
i NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
i NOTE: Vignette(s) found with missing chunk labels
Found in files:
 gwas_models.Rmd
 ...
 preimputationQC.Rmd
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:36: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:57: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:125: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ClumpLD.Rd:74: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ClumpLD.Rd:97: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ComputeGeneticPC.Rd:50: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ComputeGeneticPC.Rd:73: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/DummyCovar.Rd:26: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/DummyCovar.Rd:43: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:94: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:104: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:127: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:168: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:169: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:217: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:72: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:134: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:63: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:110: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:122: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:211: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:34: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:119: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:147: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:51: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:53: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:110: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/QCsnp.Rd:77: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/QCsnp.Rd:118: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SexCheck.Rd:60: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SexCheck.Rd:94: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SumstatGenCorr.Rd:97: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:178: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:179: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:228: unknown macro '\insertAllCited'
* Checking for library/require of GXwasR...
* Checking coding practice...
i NOTE: Avoid 'cat' and 'print' outside of 'show' methods
Found in files:
 print() in R/GXwasR_helper_functions.R (line 2042, column 9)
 ...
 print() in R/GXwasR_helper_functions.R (line 2146, column 9)
i NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
Found in files:
 R/GXwasR_helper_functions.R (line 191, column 18)
 ...
 R/GXwasR_main_functions.R (line 6098, column 21)
* Checking parsed R code in R directory, examples, vignettes...
i NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 58 times)
 suppressWarnings() in R/GXwasR_helper_functions.R (line 284, column 9)
 ...
 suppressWarnings() in R/GXwasR_main_functions.R (line 4377, column 31)
* Checking function lengths...
i NOTE: The recommended function length is 50 lines or less. There are 73
functions greater than 50 lines.
The longest 5 functions are:
 HDL.rg.parallel() (R/GXwasR_helper_functions.R): 768 lines
 ...
 AncestryCheck() (R/GXwasR_main_functions.R): 227 lines
* Checking man page documentation...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:36: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:57: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:125: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ClumpLD.Rd:74: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ClumpLD.Rd:97: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ComputeGeneticPC.Rd:50: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ComputeGeneticPC.Rd:73: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/DummyCovar.Rd:26: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/DummyCovar.Rd:43: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:94: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:104: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:127: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:168: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:169: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:217: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:72: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:134: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:63: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:110: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:122: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:211: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:34: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:119: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:147: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:51: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:53: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:110: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/QCsnp.Rd:77: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/QCsnp.Rd:118: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SexCheck.Rd:60: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SexCheck.Rd:94: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SumstatGenCorr.Rd:97: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:178: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:179: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:228: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:36: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:57: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:125: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ClumpLD.Rd:74: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ClumpLD.Rd:97: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ComputeGeneticPC.Rd:50: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ComputeGeneticPC.Rd:73: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/DummyCovar.Rd:26: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/DummyCovar.Rd:43: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:94: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:104: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:127: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:168: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:169: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:217: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:72: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:134: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:63: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:110: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:122: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:211: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:34: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:119: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:147: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:51: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:53: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:110: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/QCsnp.Rd:77: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/QCsnp.Rd:118: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SexCheck.Rd:60: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SexCheck.Rd:94: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SumstatGenCorr.Rd:97: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:178: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:179: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:228: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:36: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:57: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/AncestryCheck.Rd:125: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ClumpLD.Rd:74: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ClumpLD.Rd:97: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ComputeGeneticPC.Rd:50: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/ComputeGeneticPC.Rd:73: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/DummyCovar.Rd:26: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/DummyCovar.Rd:43: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:94: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:104: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:127: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:168: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:169: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/EstimateHerit.Rd:217: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:72: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GeneticCorrBT.Rd:134: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:63: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:110: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:122: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/GXwas.Rd:211: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:34: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:119: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/MetaGWAS.Rd:147: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:51: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:53: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/PvalComb.Rd:110: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/QCsnp.Rd:77: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/QCsnp.Rd:118: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SexCheck.Rd:60: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SexCheck.Rd:94: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/SumstatGenCorr.Rd:97: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:178: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:179: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpRUy96y/file70f626205301b/GXwasR/man/TestXGene.Rd:228: unknown macro '\insertAllCited'
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
i NOTE: skip_on_bioc() found in testthat files: test-AncestryCheck.R
test-clumpedResult.R test-ComputeGeneticPC.R test-ComputeLD.R test-ComputePRS.R
test-DummyCovar.R test-EstimateHerit.R test-executePlinkMAF.R
test-FilterPlinkSample.R test-FilterRegion.R test-FilterSNP.R
test-GeneticCorrBT.R test-GetMFPlink.R test-GXwas.R test-GXWASmiami.R
test-LDPrune.R test-MAFdiffSexControl.R test-MergeRegion.R test-MetaGWAS.R
test-PlinkSummary.R test-plinkVCF.R test-PvalComb.R test-QCSample.R
test-QCsnp.R test-SexCheck.R test-TestXGene.R test-Xhwe.R
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
i NOTE: Consider shorter lines; 3270 lines (17%) are > 80 characters long.
First few lines:
 R/datasets.R#L29 #' Example dataset for h2 estimation bet ...
 ...
 vignettes/preimputationQC.Rmd#L407 RefManageR::PrintBibliography(bib, .opts
  ...
i NOTE: Consider 4 spaces instead of tabs; 1 lines (0%) contain tabs.
First few lines:
 vignettes/postimputationQC.Rmd#L92 -**(D) Sex-specific QC at sample level:
  ...
i NOTE: Consider multiples of 4 spaces for line indents; 274 lines (1%) are
not.
First few lines:
 R/GXwasR_helper_functions.R#L1433 chunks, chunk, ResultDir, DataDir, ...
 ...
 vignettes/postimputationQC.Rmd#L161 ...
i See https://contributions.bioconductor.org/r-code.html
i See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
i Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
i Maintainer is registered at support site.
i Package is in the Support Site Watched Tags.
 BiocCheck v1.47.0 results 
 0 ERRORS |  0 WARNINGS | i 10 NOTES
i See the GXwasR.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.

nebbiolo2 BUILD BIN output

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