% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/physeq.R
\docType{data}
\name{physeq}
\alias{physeq}
\title{Example Phyloseq Object with Tree and Reference Sequences}
\format{
A \code{phyloseq} object with:
\describe{
\item{otu_table}{OTU abundance matrix (ASVs × samples).}
\item{tax_table}{Taxonomic classification of ASVs.}
\item{sample_data}{Sample-level metadata.}
\item{phy_tree}{A rooted phylogenetic tree of ASVs.}
\item{refseq}{DNA reference sequences corresponding to each ASV.}
}
}
\source{
Synthetic data generated for benchmarking and demonstration.
}
\usage{
data(physeq)
}
\value{
A \code{phyloseq} object with full microbiome data components.
}
\description{
A general-purpose \code{phyloseq} object for microbiome method development and testing.
This synthetic dataset includes OTU abundances, taxonomic classifications, sample metadata,
a phylogenetic tree, and reference sequences.
}
\examples{
if (requireNamespace("phyloseq", quietly = TRUE)) {
  data(physeq, package = "DspikeIn")
  physeq
  phyloseq::sample_names(physeq)
  phyloseq::taxa_names(physeq)
  phyloseq::phy_tree(physeq)
  phyloseq::refseq(physeq)
}
}
\keyword{datasets}
