Package: topGO
Type: Package
Title: Enrichment Analysis for Gene Ontology
Version: 2.62.0
Date: 2025-06-23
Authors@R: 
  c(
    person(
      given = "Adrian", family = "Alexa", role = c("aut"),
      email = "adrian.alexa@gmail.com"
    ),
    person(
      given = "Jörg", family = "Rahnenführer", role = c("aut")
    ),
    person(
      given = "Federico", family = "Marini", role = c("cre"), 
      email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
    )
  )
Description: topGO package provides tools for testing GO terms while
        accounting for the topology of the GO graph. Different test
        statistics and different methods for eliminating local
        similarities and dependencies between GO terms can be
        implemented and applied.
License: LGPL
Encoding: UTF-8
Depends: R (>= 2.10.0), methods, BiocGenerics (>= 0.13.6), graph (>=
        1.14.0), Biobase (>= 2.0.0), GO.db (>= 2.3.0), AnnotationDbi
        (>= 1.7.19), SparseM (>= 0.73)
Imports: lattice, matrixStats, DBI
Suggests: ALL, hgu95av2.db, hgu133a.db, genefilter, multtest,
        Rgraphviz, globaltest, knitr, BiocStyle, rmarkdown
Collate: AllClasses.R topGOmethods.R topGOgraph.R topGOalgo.R
        topGOfunctions.R topGOannotations.R topGOtests.R topGOviz.R
        zzz.R
VignetteBuilder: knitr
URL: https://github.com/federicomarini/topGO
BugReports: https://github.com/federicomarini/topGO/issues
biocViews: GeneExpression, Transcriptomics, GeneSetEnrichment, GO,
        Annotation, Pathways, SystemsBiology, Microarray, Sequencing,
        Visualization, Software
Config/pak/sysreqs: libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 13:59:04 UTC
RemoteUrl: https://github.com/bioc/topGO
RemoteRef: RELEASE_3_22
RemoteSha: 07c1375b636d4ac27a9b534db151f89cf6031004
NeedsCompilation: no
Packaged: 2026-01-25 08:05:40 UTC; root
Author: Adrian Alexa [aut],
  Jörg Rahnenführer [aut],
  Federico Marini [cre] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Federico Marini <marinif@uni-mainz.de>
Built: R 4.5.2; ; 2026-01-25 08:07:51 UTC; windows
