Package: spoon
Title: Address the Mean-variance Relationship in Spatial
        Transcriptomics Data
Version: 1.6.0
Authors@R: c(
    person(given = "Kinnary",
           family = "Shah",
           role = c("aut", "cre"),
           email = "kinnaryshahh@gmail.com",
           comment = c(ORCID = "0000-0001-7098-2116")),
    person("Boyi", "Guo",
           email = "boyi.guo.work@gmail.com",
           role = c("aut"),
           comment = c(ORCID = "0000-0003-2950-2349")),
    person("Stephanie C.", "Hicks", 
           email = "shicks19@jhu.edu", 
           role = c("aut"), 
           comment = c(ORCID = "0000-0002-7858-0231")))
Description: This package addresses the mean-variance relationship in
        spatially resolved transcriptomics data. Precision weights are
        generated for individual observations using Empirical Bayes
        techniques. These weights are used to rescale the data and
        covariates, which are then used as input in spatially variable
        gene detection tools.
URL: https://github.com/kinnaryshah/spoon
BugReports: https://github.com/kinnaryshah/spoon/issues
Imports: SpatialExperiment, BRISC, nnSVG, BiocParallel, Matrix,
        methods, SummarizedExperiment, stats, utils, scuttle
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: Spatial, SingleCell, Transcriptomics, GeneExpression,
        Preprocessing
Depends: R (>= 4.4)
Roxygen: list(markdown = TRUE)
Suggests: testthat, STexampleData, knitr, rmarkdown, BiocStyle
Config/testthat/edition: 3
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:28:09 UTC
RemoteUrl: https://github.com/bioc/spoon
RemoteRef: RELEASE_3_22
RemoteSha: c2a5b8594aaa21fe696a74abab8244179194ee8b
NeedsCompilation: no
Packaged: 2026-01-25 07:58:12 UTC; root
Author: Kinnary Shah [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7098-2116>),
  Boyi Guo [aut] (ORCID: <https://orcid.org/0000-0003-2950-2349>),
  Stephanie C. Hicks [aut] (ORCID:
    <https://orcid.org/0000-0002-7858-0231>)
Maintainer: Kinnary Shah <kinnaryshahh@gmail.com>
Built: R 4.5.2; ; 2026-01-25 08:00:26 UTC; windows
