Package: simPIC
Version: 1.6.0
Date: 2023-02-02
Type: Package
Title: Flexible simulation of paired-insertion counts for single-cell
        ATAC-sequencing data
Authors@R: c(person("Sagrika", "Chugh", role=c("aut","cre"), 
           email = "sagrika.chugh@gmail.com", 
           comment = c(ORCID = "0000-0002-8050-5214")),
           person("Heejung","Shim", role=c("aut")),
           person("Davis","McCarthy", role=c("aut")))
Depends: R (>= 4.4.0), SingleCellExperiment
Imports: BiocGenerics, checkmate (>= 2.0.0), fitdistrplus, matrixStats,
        actuar, Matrix, stats, SummarizedExperiment, rlang, S4Vectors,
        methods, scales, scuttle, edgeR, withr
Description: simPIC is a package for simulating single-cell ATAC-seq
        count data. It provides a user-friendly, well documented
        interface for data simulation. Functions are provided for
        parameter estimation, realistic scATAC-seq data simulation, and
        comparing real and simulated datasets.
biocViews: SingleCell, ATACSeq, Software, Sequencing, ImmunoOncology,
        DataImport
License: GPL-3
Encoding: UTF-8
Suggests: ggplot2 (>= 3.4.0), knitr, rmarkdown, BiocStyle, testthat (>=
        3.0.0), scater, scran, magick
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Config/testthat/edition: 3
URL: https://github.com/sagrikachugh/simPIC
BugReports: https://github.com/sagrikachugh/simPIC/issues
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:28:25 UTC
RemoteUrl: https://github.com/bioc/simPIC
RemoteRef: RELEASE_3_22
RemoteSha: c272c6fa528e93e4dad3ef8cd772a63dfb1fa2e7
NeedsCompilation: no
Packaged: 2026-01-24 20:07:07 UTC; root
Author: Sagrika Chugh [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8050-5214>),
  Heejung Shim [aut],
  Davis McCarthy [aut]
Maintainer: Sagrika Chugh <sagrika.chugh@gmail.com>
Built: R 4.5.2; ; 2026-01-24 20:09:34 UTC; windows
