Package: shinyDSP
Title: A Shiny App For Visualizing Nanostring GeoMx DSP Data
Version: 1.2.0
Description: This package is a Shiny app for interactively analyzing
        and visualizing Nanostring GeoMX Whole Transcriptome Atlas
        data. Users have the option of exploring a sample data to
        explore this app's functionality. Regions of interest (ROIs)
        can be filtered based on any user-provided metadata. Upon
        taking two or more groups of interest, all pairwise and
        ANOVA-like testing are automatically performed. Available
        ouputs include PCA, Volcano plots, tables and heatmaps.
        Aesthetics of each output are highly customizable.
Authors@R: 
    c(person("Seung J.", "Kim" , ,"skim823@uwo.ca", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-5263-0758")),
    person("Marco", "Mura",  ,"marco.mura@respirology.site.co", role = c("aut","fnd"))
    )           
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: AnnotationHub, BiocGenerics, bsicons, bslib, circlize,
        ComplexHeatmap, cowplot, dplyr, DT, edgeR, ExperimentHub,
        ggplot2, ggpubr, ggrepel, grDevices, grid, htmltools, limma,
        magrittr, pals, readr, S4Vectors, scales, scater, shiny,
        shinycssloaders, shinyjs, shinyvalidate, shinyWidgets,
        SingleCellExperiment, standR, stats, stringr,
        SummarizedExperiment, tibble, tidyr, utils, withr
biocViews: DifferentialExpression, GeneExpression, ShinyApps, Spatial,
        Transcriptomics
URL: https://github.com/kimsjune/shinyDSP, http://joonkim.ca/shinyDSP/
BugReports: https://github.com/kimsjune/shinyDSP/issues
Suggests: BiocStyle, knitr, rmarkdown, shinytest2, spelling, svglite,
        testthat (>= 3.0.0)
Language: en-US
Depends: R (>= 4.4)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev make libharfbuzz-dev
        libmagick++-dev gsfonts libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libtiff-dev libwebp-dev libxml2-dev
        libssl-dev perl libx11-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:35:46 UTC
RemoteUrl: https://github.com/bioc/shinyDSP
RemoteRef: RELEASE_3_22
RemoteSha: 867bc12da0004f293f735cae248834143a8fffbb
NeedsCompilation: no
Packaged: 2026-01-24 20:45:28 UTC; root
Author: Seung J. Kim [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5263-0758>),
  Marco Mura [aut, fnd]
Maintainer: Seung J. Kim <skim823@uwo.ca>
Built: R 4.5.2; ; 2026-01-24 20:47:46 UTC; windows
