Package: scoreInvHap
Title: Get inversion status in predefined regions
Version: 1.32.0
Authors@R: c(person("Carlos", "Ruiz", , "carlos.ruiz@isglobal.org", role = "aut"),
  person("Dolors", "Pelegrí", , "dolors.pelegri@isglobal.org", role = "aut"),
  person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org", role = c("aut", "cre")))
Maintainer: Dolors Pelegri-Siso <dolors.pelegri@isglobal.org>
Description: scoreInvHap can get the samples' inversion status of known
        inversions. scoreInvHap uses SNP data as input and requires the
        following information about the inversion: genotype frequencies
        in the different haplotypes, R2 between the region SNPs and
        inversion status and heterozygote genotypes in the reference.
        The package include this data for 21 inversions.
Depends: R (>= 3.6.0)
License: file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: Biostrings, methods, snpStats, VariantAnnotation,
        GenomicRanges, BiocParallel, graphics, SummarizedExperiment
Suggests: testthat, knitr, BiocStyle, rmarkdown
VignetteBuilder: knitr
biocViews: SNP, Genetics, GenomicVariation
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:39:17 UTC
RemoteUrl: https://github.com/bioc/scoreInvHap
RemoteRef: RELEASE_3_22
RemoteSha: 3779f3d7271bd2085aaeafadf6c8b7d42d03cc9a
NeedsCompilation: no
Packaged: 2026-01-24 22:29:51 UTC; root
Author: Carlos Ruiz [aut],
  Dolors Pelegrí [aut],
  Juan R. Gonzalez [aut, cre]
Built: R 4.5.2; ; 2026-01-24 22:31:53 UTC; windows
