Package: scmeth
Type: Package
Title: Functions to conduct quality control analysis in methylation
        data
Version: 1.30.0
Author: Divy Kangeyan <divyswar01@g.harvard.edu>
Maintainer: Divy Kangeyan <divyswar01@g.harvard.edu>
Depends: R (>= 3.5.0)
Imports: BiocGenerics, bsseq, AnnotationHub, Seqinfo, GenomicRanges,
        reshape2, stats, utils, BSgenome, DelayedArray (>= 0.5.15),
        annotatr, SummarizedExperiment (>= 1.5.6), GenomeInfoDb,
        Biostrings, DT, HDF5Array (>= 1.7.5)
Suggests: knitr, rmarkdown, BSgenome.Mmusculus.UCSC.mm10,
        BSgenome.Hsapiens.NCBI.GRCh38,
        TxDb.Hsapiens.UCSC.hg38.knownGene, org.Hs.eg.db, Biobase,
        ggplot2, ggthemes
Description: Functions to analyze methylation data can be found here.
        Some functions are relevant for single cell methylation data
        but most other functions can be used for any methylation data.
        Highlight of this workflow is the comprehensive quality control
        report.
biocViews: DNAMethylation, QualityControl, Preprocessing, SingleCell,
        ImmunoOncology
BugReports: https://github.com/aryeelab/scmeth/issues
License: GPL-2
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:43:21 UTC
RemoteUrl: https://github.com/bioc/scmeth
RemoteRef: RELEASE_3_22
RemoteSha: 0e01390f3fc61254e2217ead2cac98add5bdd093
NeedsCompilation: no
Packaged: 2026-01-22 18:33:47 UTC; root
Built: R 4.5.2; ; 2026-01-22 18:38:04 UTC; windows
